View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_74 (Length: 264)

Name: NF3069_low_74
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_74
NF3069_low_74
[»] chr8 (5 HSPs)
chr8 (81-187)||(26545861-26545965)
chr8 (44-84)||(41602586-41602626)
chr8 (48-84)||(7011232-7011268)
chr8 (40-84)||(18093013-18093057)
chr8 (40-84)||(18093245-18093289)
[»] chr4 (2 HSPs)
chr4 (72-185)||(9942328-9942442)
chr4 (57-167)||(9946822-9946934)
[»] chr5 (4 HSPs)
chr5 (76-128)||(4937004-4937056)
chr5 (49-96)||(11168128-11168175)
chr5 (40-77)||(36400803-36400840)
chr5 (49-93)||(26364700-26364744)
[»] chr3 (2 HSPs)
chr3 (49-93)||(2181410-2181454)
chr3 (48-84)||(35495062-35495098)
[»] chr6 (2 HSPs)
chr6 (49-87)||(11985003-11985041)
chr6 (41-87)||(11985200-11985246)
[»] chr2 (1 HSPs)
chr2 (40-94)||(16238206-16238260)
[»] chr1 (3 HSPs)
chr1 (41-87)||(39694157-39694203)
chr1 (121-149)||(84268-84296)
chr1 (49-93)||(11932781-11932825)
[»] chr7 (2 HSPs)
chr7 (39-116)||(48106252-48106329)
chr7 (40-84)||(31530078-31530122)
[»] scaffold0001 (1 HSPs)
scaffold0001 (40-84)||(405169-405213)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 26545861 - 26545965
Alignment:
Q  81 aaaattgtaaaagggggtaaatatagagggctcaaaagtatttattttgttagagagccaaaattgcaatatttggatacttaggggaccaatactataa 180  Q
    ||||||| ||||||||||||| ||||||| ||| |||||| ||||||| ||| ||| ||||||| |||| ||||||||||||||||| |||| ||  |||    
T  26545861 aaaattgcaaaagggggtaaacatagaggactcgaaagtagttattttttta-aga-ccaaaatcgcaacatttggatacttagggggccaaaacagtaa 26545958  T
Q  181 ttaagcc 187  Q
    |||||||    
T  26545959 ttaagcc 26545965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 41602626 - 41602586
Alignment:
Q  44 gtgtacgttgactgagtcaaaattggcttagggggccaaaa 84  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  41602626 gtgtgcgttgaccgagtcaaaattggcttagggggccaaaa 41602586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 7011232 - 7011268
Alignment:
Q  48 acgttgactgagtcaaaattggcttagggggccaaaa 84  Q
    |||||||| |||||||||||||| |||||||||||||    
T  7011232 acgttgaccgagtcaaaattggcctagggggccaaaa 7011268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 18093057 - 18093013
Alignment:
Q  40 ccacgtgtacgttgactgagtcaaaattggcttagggggccaaaa 84  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||    
T  18093057 ccacatgtgcgttgaccgagtcaaaattgacttagggggccaaaa 18093013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 18093245 - 18093289
Alignment:
Q  40 ccacgtgtacgttgactgagtcaaaattggcttagggggccaaaa 84  Q
    |||||||| ||||||| |||||||||||| | |||||||||||||    
T  18093245 ccacgtgtgcgttgaccgagtcaaaattgacctagggggccaaaa 18093289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 9942442 - 9942328
Alignment:
Q  72 tagggggccaaaattgtaaaagggggtaaatatagagggctcaaaagtatttattt-tgttagagagccaaaattgcaatatttggatacttaggggacc 170  Q
    |||||||| ||||||| ||||| ||||||| ||||| ||||| |||||| |||||| | |||| | ||||||||  ||| ||||||||||||||||| ||    
T  9942442 tagggggctaaaattgcaaaagagggtaaacatagaaggctcgaaagtagttatttcttttagggggccaaaatcacaacatttggatacttagggggcc 9942343  T
Q  171 aatactataattaag 185  Q
    || ||  ||||||||    
T  9942342 aaaacagtaattaag 9942328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 9946822 - 9946934
Alignment:
Q  57 gagtcaaaattggcttagggggccaaaattgtaaaagggggtaaatatagagggctcaaaagtatttatt--ttgttagagagccaaaattgcaatattt 154  Q
    ||||||||||||   || ||||| ||||||| |||| ||| |||| |||||||||||||||||| |||||  || |||| |  | |||||||||| ||||    
T  9946822 gagtcaaaattgagctatggggctaaaattgcaaaaagggataaacatagagggctcaaaagtagttattattttttagggtacaaaaattgcaacattt 9946921  T
Q  155 ggatacttagggg 167  Q
      |||||||||||    
T  9946922 aaatacttagggg 9946934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 4937056 - 4937004
Alignment:
Q  76 gggccaaaattgtaaaagggggtaaatatagagggctcaaaagtatttatttt 128  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||| |||||||    
T  4937056 gggccaaaactgtaaaagagggtaaacatagagggctcaaaagtagttatttt 4937004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 11168128 - 11168175
Alignment:
Q  49 cgttgactgagtcaaaattggcttagggggccaaaattgtaaaagggg 96  Q
    ||||||||  |||||||||||||| |||||||||||||| ||||||||    
T  11168128 cgttgacttggtcaaaattggcttggggggccaaaattgcaaaagggg 11168175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 36400803 - 36400840
Alignment:
Q  40 ccacgtgtacgttgactgagtcaaaattggcttagggg 77  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  36400803 ccacgtgtgcgttgactgagtcaaaattggcctagggg 36400840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 26364744 - 26364700
Alignment:
Q  49 cgttgactgagtcaaaattggcttagggggccaaaattgtaaaag 93  Q
    ||||||| ||||||||||||| |||||||||||||| ||| ||||    
T  26364744 cgttgaccgagtcaaaattggtttagggggccaaaactgtcaaag 26364700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 2181454 - 2181410
Alignment:
Q  49 cgttgactgagtcaaaattggcttagggggccaaaattgtaaaag 93  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||||    
T  2181454 cgttgaccgagtcaaaattggtttagggggccaaaattgtcaaag 2181410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 35495062 - 35495098
Alignment:
Q  48 acgttgactgagtcaaaattggcttagggggccaaaa 84  Q
    ||||||||||||||||||||||  |||||||||||||    
T  35495062 acgttgactgagtcaaaattggtctagggggccaaaa 35495098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 11985041 - 11985003
Alignment:
Q  49 cgttgactgagtcaaaattggcttagggggccaaaattg 87  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  11985041 cgttgactgtgtcaaaattgggttagggggccaaaattg 11985003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 11985200 - 11985246
Alignment:
Q  41 cacgtgtacgttgactgagtcaaaattggcttagggggccaaaattg 87  Q
    |||||||  |||||||| |||||||||||||| ||||||||||||||    
T  11985200 cacgtgtctgttgactgggtcaaaattggcttggggggccaaaattg 11985246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 16238260 - 16238206
Alignment:
Q  40 ccacgtgtacgttgactgagtcaaaattggcttagggggccaaaattgtaaaagg 94  Q
    |||||||| ||||||| |||||||||||||| | ||||||||||| ||| |||||    
T  16238260 ccacgtgtgcgttgaccgagtcaaaattggccttgggggccaaaactgtcaaagg 16238206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 39694157 - 39694203
Alignment:
Q  41 cacgtgtacgttgactgagtcaaaattggcttagggggccaaaattg 87  Q
    ||||||| ||||||||| |||||||||||| | ||||||||||||||    
T  39694157 cacgtgtccgttgactgggtcaaaattggcgtggggggccaaaattg 39694203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 84268 - 84296
Alignment:
Q  121 tttattttgttagagagccaaaattgcaa 149  Q
    |||||||||||||||||||||||||||||    
T  84268 tttattttgttagagagccaaaattgcaa 84296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 11932781 - 11932825
Alignment:
Q  49 cgttgactgagtcaaaattggcttagggggccaaaattgtaaaag 93  Q
    ||||||| ||||||||||||| ||| |||||||||||||| ||||    
T  11932781 cgttgaccgagtcaaaattggtttatggggccaaaattgtcaaag 11932825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 48106329 - 48106252
Alignment:
Q  39 gccacgtgtacgttgactgagtcaaaattggcttagggggccaaaattgtaaaagggggtaaatatagagggctcaaa 116  Q
    ||||||||| ||||||||| |||||||||||    ||| |||||||||| |||||||| |||| |||| ||| |||||    
T  48106329 gccacgtgtgcgttgactgggtcaaaattggtccggggtgccaaaattgcaaaaggggctaaacatagggggatcaaa 48106252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 31530122 - 31530078
Alignment:
Q  40 ccacgtgtacgttgactgagtcaaaattggcttagggggccaaaa 84  Q
    |||||||| ||||||| |||||||||||||| | |||||||||||    
T  31530122 ccacgtgtgcgttgaccgagtcaaaattggcattgggggccaaaa 31530078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 405213 - 405169
Alignment:
Q  40 ccacgtgtacgttgactgagtcaaaattggcttagggggccaaaa 84  Q
    |||||||| ||||| |||||||||||||||| | |||||||||||    
T  405213 ccacgtgtgcgttggctgagtcaaaattggcctggggggccaaaa 405169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University