View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_83 (Length: 250)
Name: NF3069_low_83
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_83 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 32346363 - 32346603
Alignment:
| Q |
1 |
gacactatataatcaattctagtcagcatacaaaattagttagaaaaagtaaatttagaagcattcatcttgtcaaagaatcagctctgtaaagcatagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32346363 |
gacactatataatcaattctagtcagcatacaaaattagttaggaaaagtaaatttagaagcattcatcttgtcaaagaatcagctctggaaagcatagt |
32346462 |
T |
|
| Q |
101 |
gaatgaaagcattatccgtagctctaatcttcggtactacnnnnnnngcatctaatatattggtaaacaagcatatgtccaagatatttattaaacatat |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32346463 |
gaatgaaagcattatctgtagctctaatcttcggtactacaaaaaaagcatctaacatattggtaaacaagcatatgtccaagatatttattaaacatat |
32346562 |
T |
|
| Q |
201 |
gataaagtttatgacgaatcaagtgtctcacagtttcatct |
241 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| ||||| |
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| T |
32346563 |
gatagagtttatgacgaatcaagtgtctcacagttccatct |
32346603 |
T |
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