View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_84 (Length: 250)
Name: NF3069_low_84
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_84 |
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| [»] scaffold0341 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 47678691 - 47678466
Alignment:
| Q |
14 |
atatatttcattatttcatcatagaaatgtaaaggtaaggttggagataatattgcaacttaccaaatatgatataatcaagacttttattggggacaaa |
113 |
Q |
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| T |
47678691 |
atatatttcattatttcatcatagaaatgtaaaggtaaggttggagataatattgcaacttaccaaatatgatataatcaagacttttattggggacaaa |
47678592 |
T |
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| Q |
114 |
ctcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaagcttccctgtcaataacacttcgttctta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47678591 |
ctcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaagcttccctgtcaataacacttcgttctta |
47678492 |
T |
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| Q |
214 |
aattctgtttctccttgctcagaatt |
239 |
Q |
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|||||||||||||||||||||||||| |
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| T |
47678491 |
aattctgtttctccttgctcagaatt |
47678466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 239
Target Start/End: Complemental strand, 47689978 - 47689752
Alignment:
| Q |
13 |
catatatttcattatttcatcatagaaatgtaaaggtaaggttggagataatattgcaacttaccaaatatgatataatcaagacttttattggggacaa |
112 |
Q |
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||||||| || || ||| |||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47689978 |
catatatctctttcttttatcatagaaaagcaaaggtaaggtcaaaggaaatattgcaacttaccaaatatgatataatcaagacttttattggagacaa |
47689879 |
T |
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| Q |
113 |
actcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaagcttccctgtcaataacacttcgttctt |
212 |
Q |
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| T |
47689878 |
actcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatttcgatgttgaagcttccctgtcagcaacacttcgttctt |
47689779 |
T |
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| Q |
213 |
aaattctgtttctccttgctcagaatt |
239 |
Q |
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| T |
47689778 |
aaattctgtttctccttgcttagaatt |
47689752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 6511030 - 6511127
Alignment:
| Q |
88 |
taatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaag |
185 |
Q |
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| T |
6511030 |
taatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaag |
6511127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 27369133 - 27369248
Alignment:
| Q |
70 |
aacttaccaaatatgatataatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaacta |
169 |
Q |
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|||||||||||||||| ||||||||||||||||| | ||||| ||||| || ||||| |||||| | | || || |||||||| | |||| |||||| |
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| T |
27369133 |
aacttaccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaacta |
27369232 |
T |
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| Q |
170 |
aatttcgatgttgaag |
185 |
Q |
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| T |
27369233 |
gatttcgatgttgaag |
27369248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 12711 - 12808
Alignment:
| Q |
88 |
taatcaagacttttattggggacaaactcatatatcagtagcctttcttttctttgtaagcagaaacctaatagcttaactaaatttcgatgttgaag |
185 |
Q |
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||||||||||||||||| | |||||||||||||| ||||| |||||| ||| || || ||||||||| | || | ||||||||||| |||||||| |
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| T |
12711 |
taatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaatttcggtgttgaag |
12808 |
T |
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