View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_88 (Length: 249)

Name: NF3069_low_88
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_88
NF3069_low_88
[»] chr5 (18 HSPs)
chr5 (1-207)||(42771083-42771289)
chr5 (7-84)||(6661074-6661153)
chr5 (9-84)||(9020536-9020612)
chr5 (8-85)||(20054151-20054230)
chr5 (5-85)||(4410341-4410423)
chr5 (7-85)||(18469330-18469411)
chr5 (49-85)||(10474205-10474241)
chr5 (5-85)||(17818372-17818457)
chr5 (5-85)||(26098168-26098253)
chr5 (7-85)||(10587136-10587216)
chr5 (7-85)||(18467005-18467086)
chr5 (7-85)||(27912857-27912938)
chr5 (7-85)||(38960008-38960089)
chr5 (7-85)||(696189-696272)
chr5 (21-84)||(27910769-27910834)
chr5 (7-84)||(39798351-39798431)
chr5 (8-85)||(1189489-1189571)
chr5 (49-85)||(20505724-20505760)
[»] chr7 (13 HSPs)
chr7 (5-85)||(7188859-7188941)
chr7 (9-85)||(6349122-6349200)
chr7 (7-85)||(20091042-20091122)
chr7 (7-85)||(24748917-24748997)
chr7 (7-83)||(20626364-20626443)
chr7 (7-83)||(20630255-20630334)
chr7 (7-83)||(20642674-20642753)
chr7 (50-85)||(24813384-24813419)
chr7 (6-81)||(27832529-27832607)
chr7 (7-85)||(9027070-9027151)
chr7 (86-119)||(13290356-13290389)
chr7 (5-85)||(21592026-21592110)
chr7 (85-122)||(26295835-26295872)
[»] chr3 (13 HSPs)
chr3 (7-85)||(561660-561739)
chr3 (9-85)||(31151640-31151718)
chr3 (7-85)||(28761324-28761404)
chr3 (7-84)||(17795552-17795631)
chr3 (7-84)||(19103992-19104071)
chr3 (7-85)||(28412906-28412986)
chr3 (7-85)||(25635674-25635753)
chr3 (85-122)||(31151704-31151741)
chr3 (49-85)||(9604483-9604519)
chr3 (9-84)||(26720850-26720928)
chr3 (5-85)||(27635535-27635620)
chr3 (7-85)||(41849354-41849435)
chr3 (7-85)||(747059-747141)
[»] scaffold0468 (1 HSPs)
scaffold0468 (7-84)||(1529-1608)
[»] chr6 (8 HSPs)
chr6 (7-84)||(3027740-3027819)
chr6 (4-84)||(14466671-14466753)
chr6 (7-85)||(2628762-2628844)
chr6 (9-85)||(26932439-26932518)
chr6 (5-85)||(26945491-26945573)
chr6 (49-85)||(11982908-11982944)
chr6 (49-85)||(17012429-17012465)
chr6 (49-85)||(30967602-30967638)
[»] chr4 (16 HSPs)
chr4 (9-85)||(18534719-18534797)
chr4 (9-85)||(15032430-15032507)
chr4 (7-85)||(19323061-19323141)
chr4 (6-85)||(12102449-12102530)
chr4 (7-85)||(18537361-18537441)
chr4 (5-85)||(41997856-41997938)
chr4 (7-85)||(53405508-53405589)
chr4 (1-84)||(30136911-30136996)
chr4 (5-84)||(38890112-38890193)
chr4 (7-85)||(8756139-8756218)
chr4 (9-85)||(18409230-18409309)
chr4 (4-85)||(36378656-36378741)
chr4 (5-34)||(22295529-22295558)
chr4 (7-85)||(2891660-2891743)
chr4 (49-85)||(40637493-40637529)
chr4 (49-85)||(47563174-47563210)
[»] chr1 (21 HSPs)
chr1 (7-85)||(8348941-8349020)
chr1 (7-85)||(14183491-14183571)
chr1 (5-85)||(8347162-8347243)
chr1 (24-80)||(26519328-26519385)
chr1 (9-85)||(15916706-15916785)
chr1 (18-83)||(30790288-30790355)
chr1 (5-85)||(17186016-17186098)
chr1 (22-85)||(6114990-6115055)
chr1 (7-85)||(18800459-18800540)
chr1 (7-73)||(42922543-42922608)
chr1 (23-85)||(16429286-16429350)
chr1 (9-85)||(39932398-39932477)
chr1 (5-85)||(2949116-2949201)
chr1 (7-85)||(9459313-9459394)
chr1 (7-85)||(9463140-9463221)
chr1 (6-85)||(3579467-3579551)
chr1 (85-122)||(15916771-15916808)
chr1 (7-85)||(50078673-50078756)
chr1 (7-85)||(16226489-16226571)
chr1 (49-85)||(20291823-20291859)
chr1 (49-85)||(23816251-23816287)
[»] chr8 (6 HSPs)
chr8 (14-85)||(3005522-3005594)
chr8 (6-85)||(13858371-13858453)
chr8 (7-85)||(31162582-31162663)
chr8 (5-85)||(21482677-21482761)
chr8 (7-85)||(27106784-27106864)
chr8 (49-85)||(36865956-36865992)
[»] scaffold0057 (1 HSPs)
scaffold0057 (7-85)||(16537-16616)
[»] chr2 (12 HSPs)
chr2 (9-83)||(20592368-20592444)
chr2 (7-85)||(11577994-11578074)
chr2 (9-85)||(19501878-19501958)
chr2 (7-85)||(19007930-19008013)
chr2 (21-85)||(19504213-19504280)
chr2 (1-34)||(43139672-43139705)
chr2 (49-85)||(3022509-3022545)
chr2 (49-85)||(14837605-14837641)
chr2 (49-85)||(17848776-17848812)
chr2 (4-44)||(18800243-18800283)
chr2 (49-85)||(28459074-28459110)
chr2 (49-85)||(36561017-36561053)
[»] scaffold0224 (1 HSPs)
scaffold0224 (7-73)||(15723-15788)
[»] scaffold0025 (1 HSPs)
scaffold0025 (7-85)||(69169-69250)
[»] scaffold0250 (1 HSPs)
scaffold0250 (22-85)||(3226-3290)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 42771083 - 42771289
Alignment:
Q  1 tcttgctgttttctacctttgcttgtgtttataacttccatacatttatttggttacttgattattacttgctccacacatcaagctccacacatcaagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42771083 tcttgctgttttctacctttgcttgtgtttataacttccatacatttatttggttacttgattattacttgctccacacatcaagctccacacatcaagt 42771182  T
Q  101 atttattggtgttatttttcataataaagtccggtttccaaatattttttctagttaatgaacaactgagagccaataaattactaaaatagatacaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42771183 atttattggtgttatttttcataataaagtccggtttccaaatattttttctagttaatgaacaactgagagccaataaattactaaaatagatacaaaa 42771282  T
Q  201 tgtttgt 207  Q
    |||||||    
T  42771283 tgtttgt 42771289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 6661153 - 6661074
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca-ttta-tttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  6661153 tgttttctacttttgcttgtgtttataacttccatacactttattttggttgcttgattattacttgctccacacatcaa 6661074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 9020536 - 9020612
Alignment:
Q  9 ttttctacctttgcttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||| |||||    
T  9020536 ttttctacttttgcttgtgtttataacttcaatacactttatttggttgcttgattattaattgctccacagatcaa 9020612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 20054151 - 20054230
Alignment:
Q  8 gttttctacctttgcttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||||| |||| ||||||||||||||| |||||| ||   ||||||| |||||||||||||||||| ||||||||||    
T  20054151 gttttctacttttgtttgtgtttataactttcatacactttgttttggttgcttgattattacttgctctacacatcaag 20054230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 4410341 - 4410423
Alignment:
Q  5 gctgttttctacctttg-cttgtgtttataacttccatacat-ttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||| |||||||||||||||||  || ||||||| |||||||||  ||||||||||||||||||    
T  4410341 gctgttttctacttttggcttgtatttataacttccatacaccttttttggttgcttgattatcccttgctccacacatcaag 4410423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 18469330 - 18469411
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||   ||||||| |||||||||  ||||||||||||||||||    
T  18469330 tgttttctacttttggcttgtatttataacttccatacactttgttttggttgcttgattatcccttgctccacacatcaag 18469411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 10474241 - 10474205
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10474241 tttggttacttgattattccttgctccacacatcaag 10474205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 17818457 - 17818372
Alignment:
Q  5 gctgttttctacctttg-cttgtgtttataact--tccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||||||||||| |  |||||||| ||   ||||||| |||||||||| ||||||||||||||||||    
T  17818457 gctgttttctacttttggcttgtgtttataattgttccatacactttgttttggttgcttgattattccttgctccacacatcaag 17818372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 26098253 - 26098168
Alignment:
Q  5 gctgttttctacctttg-cttgtgtttataact--tccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||||||||||| |  |||||||| ||   ||||||| |||||||||| ||||||||||||||||||    
T  26098253 gctgttttctacttttggcttgtgtttataattgttccatacactttgttttggttgcttgattattccttgctccacacatcaag 26098168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 10587136 - 10587216
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||||||||||  ||  ||||||| |||||||| | ||||||||||||||||||    
T  10587136 tgttttctacttttgacttgtatttataacttccatacactttgttttggttgcttgatta-tccttgctccacacatcaag 10587216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 18467005 - 18467086
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||   |||| || |||||||||  ||||||||||||||||||    
T  18467005 tgttttctacttttggcttgtatttataacttccatacactttgttttgattgcttgattatcccttgctccacacatcaag 18467086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 27912857 - 27912938
Alignment:
Q  7 tgttttctaccttt-gcttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| ||| |||||| ||||||||||||||||| ||   ||||||| |||||||||  ||| ||||||||||||||    
T  27912857 tgttttctacttttagcttgtatttataacttccatacactttgttttggttgcttgattatcccttactccacacatcaag 27912938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 38960089 - 38960008
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||| |||||| ||   ||||||| |||||||||  ||||||||||||||||||    
T  38960089 tgttttctacttttggcttgtatttataactttcatacactttgttttggttgcttgattatcccttgctccacacatcaag 38960008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 696189 - 696272
Alignment:
Q  7 tgttttctacctttgcttgtgtttataac--ttccataca-tttattt--ggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| |||||||||||||  ||||||||| |||||||  | || |||||||||  ||||||||||||||||||    
T  696189 tgttttctacttttgtttgtgtttataactgttccatacactttattttggttttcttgattatctcttgctccacacatcaag 696272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 27910769 - 27910834
Alignment:
Q  21 gcttgtgtttataacttccataca-ttta-tttggttacttgattattacttgctccacacatcaa 84  Q
    |||||| ||||||||||||||||| |||| |||||||  ||||||||  |||||||||||||||||    
T  27910769 gcttgtatttataacttccatacactttattttggttgattgattatcccttgctccacacatcaa 27910834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 39798351 - 39798431
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||||| |||| ||||| |||||||||| |||||| ||   ||||||| |||||||||  |||||||||||||||||    
T  39798351 tgttttctacttttggcttgtatttataactttcatacactttgttttggttgcttgattatcccttgctccacacatcaa 39798431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 1189571 - 1189489
Alignment:
Q  8 gttttctacctttg-cttgtgtttataact--tccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||||| |||| ||||||||||||| |  |||||||||||   ||||||  |||||||||| ||||||||||||||||||    
T  1189571 gttttctacttttggcttgtgtttataattgttccatacattttgttttggtggcttgattattccttgctccacacatcaag 1189489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 20505760 - 20505724
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| | |||||||||||||||||||||||||||    
T  20505760 tttggttgcctgattattacttgctccacacatcaag 20505724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 7188859 - 7188941
Alignment:
Q  5 gctgttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||||||||||||||||||||||||||  ||  ||||||| |||||||||||||||||||||||||||||    
T  7188859 gctgttttctacttttgcttgtgtttataacttccatacactttgttttggttgcttgattattacttgctccacacatcaag 7188941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 6349122 - 6349200
Alignment:
Q  9 ttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||| |||||||||||||||||||||| ||||  ||  ||||||| |||||||||||||||||||| || |||||    
T  6349122 ttttctacttttgcttgtgtttataacttccgtacactttgttttggttgcttgattattacttgctccatacgtcaag 6349200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 20091122 - 20091042
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccatacattt---atttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| ||| |||||||| |||||||||||||| ||   || ||||| |||||||||||||||||| ||||||||||    
T  20091122 tgttttctacttttacttgtgtt-ataacttccatacactttgtatctggttgcttgattattacttgctcaacacatcaag 20091042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 24748917 - 24748997
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| ||||||||||||||||  ||  |||||||  ||||||||  ||||||||||||||||||    
T  24748917 tgttttctacttttgtttgtgattataacttccatacactttgttttggttgtttgattatcccttgctccacacatcaag 24748997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 20626364 - 20626443
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccataca-tttattt-ggttacttgattattacttgctccacacatca 83  Q
    |||||||||| |||| ||| | ||||||||||||||||| ||||||| |||| |||||||||  ||||||||||||||||    
T  20626364 tgttttctacttttggcttatatttataacttccatacactttattttggttgcttgattatctcttgctccacacatca 20626443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 20630255 - 20630334
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccataca-tttattt-ggttacttgattattacttgctccacacatca 83  Q
    |||||||||| |||| ||| | ||||||||||||||||| ||||||| |||| |||||||||  ||||||||||||||||    
T  20630255 tgttttctacttttggcttatatttataacttccatacactttattttggttgcttgattatctcttgctccacacatca 20630334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 20642674 - 20642753
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccataca-tttattt-ggttacttgattattacttgctccacacatca 83  Q
    |||||||||| |||| ||| | ||||||||||||||||| ||||||| |||| |||||||||  ||||||||||||||||    
T  20642674 tgttttctacttttggcttatatttataacttccatacactttattttggttgcttgattatctcttgctccacacatca 20642753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 24813419 - 24813384
Alignment:
Q  50 ttggttacttgattattacttgctccacacatcaag 85  Q
    |||||| |||||||||||||||||||||||||||||    
T  24813419 ttggttgcttgattattacttgctccacacatcaag 24813384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 27832607 - 27832529
Alignment:
Q  6 ctgttttctacctttgctt-gtgtttataacttccatacattta--tttggttacttgattattacttgctccacacat 81  Q
    ||||||||||| |||| || ||| |||||||||||||||| ||   |||||||||||||||||| | ||||||||||||    
T  27832607 ctgttttctacttttggtttgtgattataacttccatacactttgttttggttacttgattatttcctgctccacacat 27832529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 9027151 - 9027070
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||| |||||| ||   ||||||| |||||||||  ||||||||||||||||||    
T  9027151 tgttttctacttttggcttgtatttataactttcatacactttgttttggttgcttgattatcccttgctccacacatcaag 9027070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 13290389 - 13290356
Alignment:
Q  86 ctccacacatcaagtatttattggtgttattttt 119  Q
    ||||||||||||||||||||||||||| ||||||    
T  13290389 ctccacacatcaagtatttattggtgtgattttt 13290356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 21592110 - 21592026
Alignment:
Q  5 gctgttttctacctttg-cttgtgtttataact--tccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||||||||||| |  |||||||| ||| |||||||   ||||||| |||||||||||||||||||    
T  21592110 gctgttttctacttttggcttgtgtttataattgttccatacactttttttggttgtctgattatcacttgctccacacatcaag 21592026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 26295835 - 26295872
Alignment:
Q  85 gctccacacatcaagtatttattggtgttatttttcat 122  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  26295835 gctccatacatcaagtatttattggtgtgatttttcat 26295872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 561739 - 561660
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||    
T  561739 tgttttctacttttgcttgtgtttataacttccatacactttgtttggttgcttgattattacttactccacacatcaag 561660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 31151640 - 31151718
Alignment:
Q  9 ttttctacctttgcttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||||  || ||||||||||||||||||||||| ||   ||||||| |||||||||||||||||||||||||||||    
T  31151640 ttttctactcttacttgtgtttataacttccatacactttgttttggttgcttgattattacttgctccacacatcaag 31151718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 28761404 - 28761324
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca-tttattt-ggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||||||||| |||||| ||||||||| ||||||| ||||  |||||||| |||||||||||||||||||    
T  28761404 tgttttctacttttgcttgtgattataatttccatacactttattttggttgtttgattatcacttgctccacacatcaag 28761324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 17795552 - 17795631
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccatacattt--atttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||||| |||| ||||| |||||||||||||||||||   ||||||| ||||| ||| | ||||||||||||||||    
T  17795552 tgttttctacttttgtttgtgattataacttccatacattttattttggttgcttgactatcagttgctccacacatcaa 17795631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 19103992 - 19104071
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccatacattt--atttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||||| |||| ||||| |||||||||||||||||||   ||||||| ||||| ||| | ||||||||||||||||    
T  19103992 tgttttctacttttgtttgtgattataacttccatacattttattttggttgcttgactatcagttgctccacacatcaa 19104071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 28412986 - 28412906
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacatttattt-ggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||| |||||| || ||| ||||||||||||||  ||||||||||||||||||    
T  28412986 tgttttctacttttgacttgtatttataactttcatacacttgttttggttacttgattatcccttgctccacacatcaag 28412906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 25635674 - 25635753
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccatacatttat-ttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||||||||||||||||||   |  || || | |||||| |||||||||||||||||||||||||||||    
T  25635674 tgttttctacttttgcttgtgtttataactgttacccacttgtattggttgcttgattattacttgctccacacatcaag 25635753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 31151704 - 31151741
Alignment:
Q  85 gctccacacatcaagtatttattggtgttatttttcat 122  Q
    |||||||||||||||||||||||||||| |||||||||    
T  31151704 gctccacacatcaagtatttattggtgtgatttttcat 31151741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 9604519 - 9604483
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9604519 tttggttacttgattattccttgctccacacatcaag 9604483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 26720850 - 26720928
Alignment:
Q  9 ttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||| |||| ||||| ||||||||||||||||| ||   ||||||| |||||||||  |||||||||||||||||    
T  26720850 ttttctacttttggcttgtatttataacttccatacactttgttttggttgcttgattatcccttgctccacacatcaa 26720928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 27635620 - 27635535
Alignment:
Q  5 gctgttttctacctttg-cttgtgtttataact--tccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||||||||||| |  |||||||| ||   ||||||| |||||||||| ||||||||||||||||||    
T  27635620 gctgttttctacttttggcttgtgtttataattgttccatacactttgttttggttgcttgattattccttgctccacacatcaag 27635535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 41849354 - 41849435
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||| |||||| ||   ||||||| |||||||||  ||||||||||||||||||    
T  41849354 tgttttctacttttggcttgtatttataactttcatacactttgttttggttgcttgattatcccttgctccacacatcaag 41849435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 747059 - 747141
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta---tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||| |||||| ||    ||||||| |||||||||  ||||||||||||||||||    
T  747059 tgttttctacttttggcttgtatttataactttcatacactttgattttggttgcttgattatcccttgctccacacatcaag 747141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 1608 - 1529
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||||| |||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  1608 tgttttctacttttggcttgtgtttataacttccatacactttgtttggttgcttgattattacttgctccacacatcaa 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 3027819 - 3027740
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||    
T  3027819 tgttttctacttttgacttgtatttataacttccatacactttatttggttgctcgattattacttgctccacacatcaa 3027740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 14466671 - 14466753
Alignment:
Q  4 tgctgttttctacctttgcttgtgtttataacttccatacattt--atttggttacttgattattacttgctccacacatcaa 84  Q
    ||||||||||||| |||| ||||| ||||||||| |||||||||   ||||||| ||||| ||| ||||||| ||||||||||    
T  14466671 tgctgttttctacttttgtttgtgattataactttcatacattttgttttggttgcttgactatcacttgctgcacacatcaa 14466753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 2628844 - 2628762
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta---tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||    ||||||| |||||||||  ||||||||||||||||||    
T  2628844 tgttttctacttttggcttgtatttataacttccatacactttgattttggttgcttgattatcccttgctccacacatcaag 2628762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 26932518 - 26932439
Alignment:
Q  9 ttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||||||||| ||||| |||||||||| |||||| ||   ||||||| |||||||||  ||||||||||||||||||    
T  26932518 ttttctacctttggcttgtatttataactttcatacactttgttttggttgcttgattatcccttgctccacacatcaag 26932439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 26945491 - 26945573
Alignment:
Q  5 gctgttttctacctttg-cttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| |||||||||||||||||| |||| ||| |||| ||  |||||||||||||| | |||| ||||||    
T  26945491 gctgttttctacttttggcttgtgtttataacttccttacactttgtttgattctttgattattacttgtttcacatatcaag 26945573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 11982944 - 11982908
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  11982944 tttggttgcttgattattccttgctccacacatcaag 11982908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 17012429 - 17012465
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  17012429 tttggttgcttgattattatttgctccacacatcaag 17012465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 30967602 - 30967638
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||||||||  ||||||||||||||||||    
T  30967602 tttggttacttgattatctcttgctccacacatcaag 30967638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 18534797 - 18534719
Alignment:
Q  9 ttttctacctttgcttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||| |||| |||||||||||||||||||||| ||   ||||||| |||||||||||||||||||||||||||||    
T  18534797 ttttctacttttgtttgtgtttataacttccatacactttgttttggttgcttgattattacttgctccacacatcaag 18534719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 15032507 - 15032430
Alignment:
Q  9 ttttctacctttgcttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||| |||| || ||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||    
T  15032507 ttttctacttttgtttatgtttataacttccatacactttgtttggttgcttgattattacttgctccgcacatcaag 15032430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 19323061 - 19323141
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca-tttatttg-gttacttgattattacttgctccacacatcaag 85  Q
    |||||| ||| |||||| |||||||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||    
T  19323061 tgttttatacttttgctcgtgtttataacttccatacactttattttagttgcttgattattacttgctccacacatcaag 19323141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 12102449 - 12102530
Alignment:
Q  6 ctgttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| ||| |||||||||||||||||||||||||||  ||  ||||||| || | ||||||||||||||||||||||||    
T  12102449 ctgttttttacttttgcttgtgtttataacttccatacactttgttttggttgctcggttattacttgctccacacatcaag 12102530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 18537441 - 18537361
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||| ||| |||| |||||||||||||||||||||| ||   |||| || |||||||||||||||||||||||||||||    
T  18537441 tgttttatacttttgtttgtgtttataacttccatacactttgttttgattgcttgattattacttgctccacacatcaag 18537361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 41997856 - 41997938
Alignment:
Q  5 gctgttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||| ||||||||||||||||  ||  ||||||| ||||||||| |||| ||||||||||||||    
T  41997856 gctgttttctacttttgtttgtgattataacttccatacactttgttttggttgcttgattatcactttctccacacatcaag 41997938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 53405508 - 53405589
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| ||||||||||||||||||||   ||||||| |||||||||  ||||||||||||||||||    
T  53405508 tgttttctacttttggcttgtatttataacttccatacattttgttttggttgcttgattatcccttgctccacacatcaag 53405589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30136911 - 30136996
Alignment:
Q  1 tcttgctgttttctacctttgctt-gtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaa 84  Q
    ||||| |||||||||| |||| || |||||||||||||| ||||| |||||||||||  |||||||||||||| |||||| |||||    
T  30136911 tcttgttgttttctacttttggtttgtgtttataacttctatacactttatttggttgtttgattattacttgttccacatatcaa 30136996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 38890193 - 38890112
Alignment:
Q  5 gctgttttctacctttgc-ttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaa 84  Q
    |||||||||||  ||||| |||||||||||||||||||||| ||| ||||||| || ||||||| ||||||||||| |||||    
T  38890193 gctgttttctaattttgccttgtgtttataacttccatacactttgtttggttgctagattattccttgctccacatatcaa 38890112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 8756218 - 8756139
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccatacatttattt-ggttacttgattattacttgctccacacatcaag 85  Q
    |||||| ||| |||||||||||||||||||  ||  || || ||| |||| |||||||||||||||||||||||||||||    
T  8756218 tgttttttacttttgcttgtgtttataactgtcacccacttgttttggttgcttgattattacttgctccacacatcaag 8756139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 18409309 - 18409230
Alignment:
Q  9 ttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||| |||| |||||| |||||||||||||||| ||   ||||||| ||||| ||| |||||||||||||||||||    
T  18409309 ttttctacttttgtcttgtgattataacttccatacactttgttttggttgcttgactatcacttgctccacacatcaag 18409230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 36378656 - 36378741
Alignment:
Q  4 tgctgttttctaccttt-gcttgtgtttataact--tccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||||||||| ||| | |||||||||||| |  | |||||| ||| ||||||| |||||||||||||||||||||| ||||||    
T  36378656 tgctgttttctacttttcgtttgtgtttataattgtttcatacactttgtttggttgcttgattattacttgctccacatatcaag 36378741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 22295529 - 22295558
Alignment:
Q  5 gctgttttctacctttgcttgtgtttataa 34  Q
    ||||||||||||||||||||||||||||||    
T  22295529 gctgttttctacctttgcttgtgtttataa 22295558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 2891660 - 2891743
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataact--tccataca-tttattt-ggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||||||||||| |  |||||||| ||||||| |||| ||||||||||  |||||||||||||||||    
T  2891660 tgttttctacttttggcttgtgtttataattgttccatacactttattttggttgcttgattattctttgctccacacatcaag 2891743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 40637493 - 40637529
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  40637493 tttggttgcttgattattccttgctccacacatcaag 40637529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 47563174 - 47563210
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  47563174 tttggttgcttgattattccttgctccacacatcaag 47563210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 8349020 - 8348941
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||| |||||    
T  8349020 tgttttctacttttgtttgtgtttataacttccatacactttgtttggttgcttgattattacttgttccacacgtcaag 8348941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 14183571 - 14183491
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||| | |||||||||||||||||||||||||||  ||  ||||||| ||||||||||||||||| |||||||||||    
T  14183571 tgttttcttcttttgcttgtgtttataacttccatacactttgttttggttgcttgattattacttgcttcacacatcaag 14183491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 8347243 - 8347162
Alignment:
Q  5 gctgttttctacctttgcttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| ||||||| |||||||||||| |||| | ||| ||||||| |||||||||||||| |||||| |||||||    
T  8347243 gctgttttctacttttgcttatgtttataactttcatatactttgtttggttgcttgattattacttactccacgcatcaag 8347162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 26519385 - 26519328
Alignment:
Q  24 tgtgtttataacttccataca-tttatttggttacttgattattacttgctccacaca 80  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  26519385 tgtgtttataacttccatacactttgtttggttgcttgattattacttgctccacaca 26519328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 15916706 - 15916785
Alignment:
Q  9 ttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||| |||| ||||||||||||||||||||||| ||   ||||||| ||||||| |||||||||||||||||||||    
T  15916706 ttttctacttttggcttgtgtttataacttccatacactttgttttggttgcttgattgttacttgctccacacatcaag 15916785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 30790355 - 30790288
Alignment:
Q  18 tttgcttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatca 83  Q
    |||| |||||||||||||||||||||| ||   ||||||| ||||||||||||||||| |||||||||    
T  30790355 tttgtttgtgtttataacttccatacactttgttttggttgcttgattattacttgcttcacacatca 30790288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 17186098 - 17186016
Alignment:
Q  5 gctgttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||| ||||||||||||||||  ||  ||||||| ||||| ||| |||||||||||| ||||||    
T  17186098 gctgttttctacttttgtttgtgattataacttccatacactttgttttggttgcttgactatcacttgctccacatatcaag 17186016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 6115055 - 6114990
Alignment:
Q  22 cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||| ||||||||||||||||||||   ||||||| ||||||||| |||| ||||||||||||||    
T  6115055 cttgtatttataacttccatacattttattttggttgcttgattatcactttctccacacatcaag 6114990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 18800540 - 18800459
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| |||||||||||||||||||||||  ||  |||| || ||||||||||| |||||| ||||||||||    
T  18800540 tgttttctacttttggcttgtgtttataacttccatacactttgttttgattgcttgattattatttgctctacacatcaag 18800459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 42922543 - 42922608
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccatacatttatttggttacttgattattacttgct 73  Q
    |||||||||| |||| ||||||||||||||||||||| ||| |||  || |||||||||||||||||    
T  42922543 tgttttctacttttgtttgtgtttataacttccatac-tttttttttttgcttgattattacttgct 42922608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 16429286 - 16429350
Alignment:
Q  23 ttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||||||||||||| ||   ||||||| | ||||||| |||||||||||||||||||    
T  16429286 ttgtgtttataacttccatacactttgttttggttgcctgattatcacttgctccacacatcaag 16429350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 39932398 - 39932477
Alignment:
Q  9 ttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||| |||| ||||| ||||||||||||||||| ||   ||||||| |||||||||  ||||||||||||||||||    
T  39932398 ttttctacttttggcttgtatttataacttccatacactttgttttggttgcttgattatcccttgctccacacatcaag 39932477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 2949201 - 2949116
Alignment:
Q  5 gctgttttctacctttg-cttgtgtttataact--tccataca-tttattt-ggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||||||||||| |  |||||||| ||||||| |||| |||||||||  ||||||||||||||||||    
T  2949201 gctgttttctacttttggcttgtgtttataattgttccatacactttattttggttgcttgattatcccttgctccacacatcaag 2949116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 9459394 - 9459313
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||| |||||| ||   ||||||| |||||||||  ||||||||||||||||||    
T  9459394 tgttttctacttttggcttgtatttataactttcatacactttgttttggttgcttgattatcccttgctccacacatcaag 9459313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 9463221 - 9463140
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||| |||||| ||   ||||||| |||||||||  ||||||||||||||||||    
T  9463221 tgttttctacttttggcttgtatttataactttcatacactttgttttggttgcttgattatcccttgctccacacatcaag 9463140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 3579551 - 3579467
Alignment:
Q  6 ctgttttctacctttg-cttgtgtttataact--tccataca-tttattt-ggttacttgattattacttgctccacacatcaag 85  Q
    ||||||||||| |||| ||||||||||||| |  |||||||| ||||||| |||| | ||||||| |||||||||||||||||||    
T  3579551 ctgttttctacttttggcttgtgtttataattgttccatacactttattttggttgcctgattatcacttgctccacacatcaag 3579467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 15916771 - 15916808
Alignment:
Q  85 gctccacacatcaagtatttattggtgttatttttcat 122  Q
    |||||||||||||||||||||||||||| | |||||||    
T  15916771 gctccacacatcaagtatttattggtgtgacttttcat 15916808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 50078756 - 50078673
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataact--tccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||||||||||| |  |||||||| ||   ||||||| |||||||||| ||||||||||||||||||    
T  50078756 tgttttctacttttggcttgtgtttataattgttccatacactttgttttggttgcttgattattccttgctccacacatcaag 50078673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 16226489 - 16226571
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta---tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| |||||||||| |||||| ||    ||||||| |||||||||  ||||||||||||||||||    
T  16226489 tgttttctacttttggcttgtatttataactttcatacactttgattttggttgcttgattatcccttgctccacacatcaag 16226571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 20291823 - 20291859
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||||||||  ||||||||||||||||||    
T  20291823 tttggttacttgattatctcttgctccacacatcaag 20291859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 23816251 - 23816287
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  23816251 tttggttgcttgattattccttgctccacacatcaag 23816287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 3005594 - 3005522
Alignment:
Q  14 tacctttgcttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| ||||| ||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||    
T  3005594 taccttttcttgtatttataacttccatacactttgtttggttgtttgattattacttgctccacacatcaag 3005522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 13858453 - 13858371
Alignment:
Q  6 ctgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||   ||||||| ||||||||| |||||||||||||||||||    
T  13858453 ctgttttctacttttggcttgtgtttataacttccatacactttgttttggttgcttgattatcacttgctccacacatcaag 13858371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 31162582 - 31162663
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||   ||||||||||| |||||||||||||||||||||||||    
T  31162582 tgttttctacttttggcttgtatttataacttccatacactttgttttggttacttaattattacttgctccacacatcaag 31162663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 21482677 - 21482761
Alignment:
Q  5 gctgttttctacctttgcttgtgtttataacttccataca-ttta---tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||||| |||| ||||| |||||||||||||||| ||||   ||||||| ||| ||||| |||||||||||||||||||    
T  21482677 gctgttttctacttttgtttgtgattataacttccatacactttattttttggttgcttcattatcacttgctccacacatcaag 21482761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 27106864 - 27106784
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| ||||  |||| ||||||||||||||||  ||  ||||||| ||||| |||  ||||||||||||||||||    
T  27106864 tgttttctacttttgtctgtgattataacttccatacactttgttttggttgcttgactatcccttgctccacacatcaag 27106784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 36865956 - 36865992
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  36865956 tttggttgcttgattatcacttgctccacacatcaag 36865992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 16616 - 16537
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||  ||||||||| |||||||||||||| || ||| ||| ||| |||||||||||||||||||||||||||||    
T  16616 tgttttctatttttgcttgtatttataacttccatgcactttgtttagttgcttgattattacttgctccacacatcaag 16537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 20592368 - 20592444
Alignment:
Q  9 ttttctacctttgcttgtgtttataacttccataca--tttatttggttacttgattattacttgctccacacatca 83  Q
    |||||||| |||||||||| ||||||||||||||||  ||  ||||||| |||||||||||||||||| ||||||||    
T  20592368 ttttctacttttgcttgtgattataacttccatacactttgttttggttgcttgattattacttgctctacacatca 20592444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 11578074 - 11577994
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccataca-tttattt-ggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| |||||||||| |||||||||| | ||||||| |||| ||||||||||||||| |||||||||||||    
T  11578074 tgttttctacttttggcttgtgttta-aacttccatatactttattttggttgcttgattattacttgttccacacatcaag 11577994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 19501958 - 19501878
Alignment:
Q  9 ttttctacctttg-cttgtgtttataacttccatacattta---tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||| |||| ||||| ||||||||||||||||| ||    ||||||| |||||||||  ||||||||||||||||||    
T  19501958 ttttctacttttggcttgtatttataacttccatacactttgtttttggttgcttgattatcccttgctccacacatcaag 19501878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 19007930 - 19008013
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataact--tccatacattta--tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||||||||||| |  |||||||| ||   ||||||| |||||||||| ||||||||||||||||||    
T  19007930 tgttttctacttttggcttgtgtttataattgttccatacactttgttttggttgcttgattattccttgctccacacatcaag 19008013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 19504280 - 19504213
Alignment:
Q  21 gcttgtgtttataacttccatacattta---tttggttacttgattattacttgctccacacatcaag 85  Q
    |||||| ||||||||||||||||| ||    ||||||| |||||||||  ||||||||||||||||||    
T  19504280 gcttgtatttataacttccatacactttgtttttggttgcttgattatcccttgctccacacatcaag 19504213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43139672 - 43139705
Alignment:
Q  1 tcttgctgttttctacctttgcttgtgtttataa 34  Q
    |||||||||||||||| |||||||||||||||||    
T  43139672 tcttgctgttttctacttttgcttgtgtttataa 43139705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 3022509 - 3022545
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  3022509 tttggttgcttgattatcacttgctccacacatcaag 3022545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 14837605 - 14837641
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  14837605 tttggttgcttgattatcacttgctccacacatcaag 14837641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 17848776 - 17848812
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  17848776 tttggttgcttgattatcacttgctccacacatcaag 17848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 18800283 - 18800243
Alignment:
Q  4 tgctgttttctacctttgcttgtgtttataacttccataca 44  Q
    ||||||||||||| |||||||| | ||||||||||||||||    
T  18800283 tgctgttttctacttttgcttgcgattataacttccataca 18800243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 28459110 - 28459074
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  28459110 tttggttgcttgattatcacttgctccacacatcaag 28459074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 36561053 - 36561017
Alignment:
Q  49 tttggttacttgattattacttgctccacacatcaag 85  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  36561053 tttggttgcttgattattccttgctccacacatcaag 36561017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 15788 - 15723
Alignment:
Q  7 tgttttctacctttgcttgtgtttataacttccatacatttatttggttacttgattattacttgct 73  Q
    |||||||||| |||| ||||||||||||||||||||| ||| |||  || |||||||||||||||||    
T  15788 tgttttctacttttgtttgtgtttataacttccatac-tttttttttttgcttgattattacttgct 15723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 69250 - 69169
Alignment:
Q  7 tgttttctacctttg-cttgtgtttataacttccatacattt--atttggttacttgattattacttgctccacacatcaag 85  Q
    |||||||||| |||| ||||| ||||||||||||||||||||   ||||||| | |||||||  ||||||||||||||||||    
T  69250 tgttttctacttttggcttgtatttataacttccatacattttgttttggttgcctgattatcccttgctccacacatcaag 69169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 3226 - 3290
Alignment:
Q  22 cttgtgtttataacttccataca-tttatttggttacttgattattacttgctccacacatcaag 85  Q
    ||||| |||||||||| |||||| ||| ||||||| |||||||||  ||||||||||||||||||    
T  3226 cttgtatttataactttcatacactttgtttggttgcttgattatcccttgctccacacatcaag 3290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University