View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3069_low_89 (Length: 247)

Name: NF3069_low_89
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3069_low_89
NF3069_low_89
[»] chr3 (3 HSPs)
chr3 (17-236)||(51733803-51734023)
chr3 (17-112)||(48735485-48735581)
chr3 (32-115)||(46288450-46288534)
[»] chr6 (1 HSPs)
chr6 (21-112)||(24971077-24971169)
[»] chr4 (2 HSPs)
chr4 (38-112)||(37483135-37483210)
chr4 (17-93)||(47484189-47484266)
[»] chr8 (4 HSPs)
chr8 (17-111)||(12973818-12973913)
chr8 (17-99)||(39388345-39388428)
chr8 (31-112)||(35640701-35640783)
chr8 (33-112)||(31680391-31680471)
[»] chr2 (1 HSPs)
chr2 (17-126)||(846289-846399)
[»] chr5 (1 HSPs)
chr5 (17-117)||(8422827-8422928)
[»] chr7 (1 HSPs)
chr7 (185-213)||(42111206-42111234)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 51733803 - 51734023
Alignment:
Q  17 ataagtatctaagtacttggggaacactcccataaaatctagctatcaaagggaagaaccaagtcatttaaatactccatcaaacatcccatactaatca 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51733803 ataagtatctaagtacttggggaatactcccataaaatctagctatcaaagggaagaaccaagtcatttaaatactccatcaaacatcccatactaatca 51733902  T
Q  117 acgtgtacttgggca-cccataatatccaagtctttatcatagcaccgcagctgagagctgacatctgccactctacgacactttactcagtctttccaa 215  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51733903 acgtgtacttgggcaccccataatatccaagtctttatcatagcaccgcagctgagagctgacatctggcactctacgacactttactcagtctttccaa 51734002  T
Q  216 gcaaagcaacgacttgtctct 236  Q
    |||||||||||||||||||||    
T  51734003 gcaaagcaacgacttgtctct 51734023  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 48735485 - 48735581
Alignment:
Q  17 ataagtatctaagtacttggggaacactcccataaaatctagctatcaa-agggaagaaccaagtcatttaaatactccatcaaacatcccatacta 112  Q
    ||||| ||| ||| ||||||||||| || || ||||| ||| ||||||| ||||||||||| || || |||||||||||||| ||||| ||||||||    
T  48735485 ataagcatccaaggacttggggaaccctgccttaaaagctacctatcaagagggaagaaccgagccacttaaatactccatcgaacatgccatacta 48735581  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 46288534 - 46288450
Alignment:
Q  32 cttggggaacactcccataaaatctagctatcaaagggaa-gaaccaagtcatttaaatactccatcaaacatcccatactaatc 115  Q
    ||||||||||  |||| ||||| |||||||| || || || |||||||| || |||||||||||| | | |||||||||||||||    
T  46288534 cttggggaaccttcccttaaaagctagctattaagggaaaagaaccaagccacttaaatactccaccgagcatcccatactaatc 46288450  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 24971077 - 24971169
Alignment:
Q  21 gtatctaagtacttggggaacactcccataaaatctagctatcaaaggga-agaaccaagtcatttaaatactccatcaaacatcccatacta 112  Q
    ||||||||| ||||||||||| |||||  |||| ||||||||||| |||| ||||||||  || |||||||||||| ||| ||||||||||||    
T  24971077 gtatctaagcacttggggaaccctccctgaaaagctagctatcaaggggagagaaccaaaccacttaaatactccaccaagcatcccatacta 24971169  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 37483210 - 37483135
Alignment:
Q  38 gaacactcccataaaatctagctatcaaagg-gaagaaccaagtcatttaaatactccatcaaacatcccatacta 112  Q
    |||| ||||| ||||| |||| |||||| || ||||||||||| || |||||||||||| ||||||||||||||||    
T  37483210 gaaccctcccttaaaaactagttatcaagggagaagaaccaagccacttaaatactccaccaaacatcccatacta 37483135  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 47484189 - 47484266
Alignment:
Q  17 ataagtatctaagtacttggggaacactcccataaaatctagctatcaaagg-gaagaaccaagtcatttaaatactc 93  Q
    ||||||||| ||| ||||||||||| ||||| ||||| |||| |||||| || ||||||||||| || || |||||||    
T  47484189 ataagtatccaagcacttggggaaccctcccttaaaagctagttatcaagggagaagaaccaagccacttcaatactc 47484266  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 12973818 - 12973913
Alignment:
Q  17 ataagtatctaagtacttggggaacactcccataaaatctagctatcaaagggaa-gaaccaagtcatttaaatactccatcaaacatcccatact 111  Q
    |||||||| |||| ||  ||||||| || || |||||  |||||||||||||||| ||||||||||| ||||||| | || ||| |||||||||||    
T  12973818 ataagtatttaagcaccaggggaactcttccttaaaagttagctatcaaagggaaagaaccaagtcacttaaatatttcaccaagcatcccatact 12973913  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 39388428 - 39388345
Alignment:
Q  17 ataagtatctaagtacttggggaacactcccataaaatctagctatcaa-agggaagaaccaagtcatttaaatactccatcaa 99  Q
    ||||||||| ||| ||||||| ||| ||| | ||||| ||||||||||| |||||||||||||  || |||||||||| |||||    
T  39388428 ataagtatcaaagcacttgggaaaccctctcttaaaagctagctatcaagagggaagaaccaatccacttaaatactcaatcaa 39388345  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 35640701 - 35640783
Alignment:
Q  31 acttggggaacactcccataaaatctagctatcaaag-ggaagaaccaagtcatttaaatactccatcaaacatcccatacta 112  Q
    ||||||||| | ||||| ||||| |||||||| || | |||||||||||| || |||| ||||||| ||| ||||||||||||    
T  35640701 acttggggagccctcccttaaaagctagctattaaggtggaagaaccaagccacttaagtactccaccaagcatcccatacta 35640783  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 31680471 - 31680391
Alignment:
Q  33 ttggggaacactcccataaaatctagctatcaa-agggaagaaccaagtcatttaaatactccatcaaacatcccatacta 112  Q
    ||||||||| ||||| ||||| ||||||||||| ||||||||||||||  | ||||||| ||||   ||||||| ||||||    
T  31680471 ttggggaaccctcccttaaaagctagctatcaagagggaagaaccaagctacttaaataatccactgaacatcctatacta 31680391  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 846289 - 846399
Alignment:
Q  17 ataagtatctaagtacttggggaacactcccataaaatctagctatcaaa-gggaagaaccaagtcatttaaatactccatcaaacatcccatactaatc 115  Q
    |||||||| |||||||| | ||||  ||||| |||||  ||||| ||||| ||||||||||||| || |||||||||||| | | |||| ||||||| ||    
T  846289 ataagtatgtaagtactcgaggaatcctcccttaaaagttagctgtcaaaagggaagaaccaagccacttaaatactccaccgagcatctcatactactc 846388  T
Q  116 aacgtgtactt 126  Q
    || ||| ||||    
T  846389 aatgtggactt 846399  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 8422827 - 8422928
Alignment:
Q  17 ataagtatctaagtacttggggaacactcccataaaatctagctatcaaaggg-aagaaccaagtcatttaaatactccatcaaacatcccatactaatc 115  Q
    |||| |||||||  |||||| |||| ||||| || || ||||||||||| ||| |||||||||| || ||||||||||||   | |||||||||||| ||    
T  8422827 ataaatatctaacaacttggagaaccctcccttataagctagctatcaagggggaagaaccaagccacttaaatactccactgagcatcccatactattc 8422926  T
Q  116 aa 117  Q
    ||    
T  8422927 aa 8422928  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 42111234 - 42111206
Alignment:
Q  185 cactctacgacactttactcagtctttcc 213  Q
    |||||||||||||||||||||||||||||    
T  42111234 cactctacgacactttactcagtctttcc 42111206  T

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