View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_90 (Length: 247)
Name: NF3069_low_90
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_90 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27362658 - 27362433
Alignment:
| Q |
1 |
aaaaacaagtgataaatatttgtcattggtacgtaaaataacacaaggctccgtcaattcaggaagtcattcagcttagtcagagaaattggctctttgc |
100 |
Q |
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| T |
27362658 |
aaaaacaagggataaatatttgtcattggtacgtaaaata-cacaaggctccatcaattcaggaagtcattcagcttagtcagagaaattggctctttgc |
27362560 |
T |
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| Q |
101 |
aaaattgtgatcttatcaacaggaatcacttgagatttaatagcaagaagatcaacttcagatcagctattaatctcatcatcttaggaactgccatgat |
200 |
Q |
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| T |
27362559 |
aaaattgtgatcttatcagcaggaatcacttgagatttaatagcaagaagatcaacttcagatcagctattaatctcatcatcttaggaactgccatgat |
27362460 |
T |
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| Q |
201 |
aggtaataactccaagtgtgctgcaaa |
227 |
Q |
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| T |
27362459 |
aggtaataactccaagtgtgctgcaaa |
27362433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 45401074 - 45401307
Alignment:
| Q |
1 |
aaaaacaagtgataaatatttgtcattggtacgtaaaataacacaaggctccgtcaattcaggaagtcattcagcttagtcagagaaattggctctttgc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45401074 |
aaaaacaagggataaatatttgtcattggtacgtaaaataacacaaggctccatcaattcaggaagtcattcagcttagtcagagaaattggctctttgc |
45401173 |
T |
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| Q |
101 |
aaaattgtgatcttatcaacaggaatcacttgagatttaatagcaagaagatcaacttcagatcag--ctattaatctcatcatcttaggaactgccatg |
198 |
Q |
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| T |
45401174 |
aaaattgtgatcttatcaacaggaatcacttgagatttaatagcaaggagatcaacttcagatcagttatattaatctcatcatcttaggaactgccatg |
45401273 |
T |
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| Q |
199 |
ataggtaataactccaagtgtgctgcaaattaaa |
232 |
Q |
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| T |
45401274 |
ataggtaataactccaagtgtgctgcaaattaaa |
45401307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 14002465 - 14002390
Alignment:
| Q |
132 |
gagatttaatagcaagaagatcaacttcagatcagctattaatctcatcatcttaggaactgccatgataggtaat |
207 |
Q |
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||||||||| | ||| |||||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||| |
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| T |
14002465 |
gagatttaacaacaaaaagatcaatgtcagatcagctatcaatctcattatcttaggaactgctatgataggtaat |
14002390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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