View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3069_low_91 (Length: 246)
Name: NF3069_low_91
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_91 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 39109505 - 39109292
Alignment:
| Q |
17 |
aaggaagaaggtgattgatgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttcgtcttccaaacggaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39109505 |
aaggaagaaggtgattgatgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttcgtcttccaaacggaga |
39109406 |
T |
|
| Q |
117 |
atcaaactttgcatcattacctatgatttgagaccgcaaccaacacagtttttcctccaccctttcattacaaggcaggtccatttccacgagtttctta |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39109405 |
atcaaactttgcataattacctatgatttgagaccgcaaccaacagagtttttcctccacactttcattacaaggcaggtccatttccacaagtttctta |
39109306 |
T |
|
| Q |
217 |
aaggattcagggtg |
230 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39109305 |
aaggattcagggtg |
39109292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 39100574 - 39100401
Alignment:
| Q |
22 |
agaaggtgattgatgatgaaatcttcattgtaacgaagactacgaccagaagcagtgtgatcagcatagacaagttttcgtcttccaaacggagaatcaa |
121 |
Q |
| |
|
||||| || ||| ||||||| | |||| || || ||||||| ||||| ||||| |||||||||| |||||||||||||| | ||||| ||||| | | |
|
|
| T |
39100574 |
agaagatgtttggtgatgaagttttcaatgaaatgaagactgcgacctgaagctgtgtgatcagaatagacaagttttctagtaccaaaaggagagttga |
39100475 |
T |
|
| Q |
122 |
actttgcatcattacctatgatttgagaccgcaaccaacacagtttttcctccaccctttcattacaaggcagg |
195 |
Q |
| |
|
| | | |||||||||| |||||||| || | |||||| || |||||||| ||||| ||||||||| |||||| |
|
|
| T |
39100474 |
attctacatcattaccaatgatttgtgatctcaaccagcatagtttttcttccactgattcattacatggcagg |
39100401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University