View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_93 (Length: 240)
Name: NF3069_low_93
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_93 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 30682125 - 30682246
Alignment:
| Q |
74 |
cttagtaagctatatgtgaaatgacaaatacagcaaaaaatagttataaagttgtcaatggacagtgagaaatgcagaaccaaagccctcaaaactgctg |
173 |
Q |
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| T |
30682125 |
cttagtaagctatatgtgaaatgacaaatacagcaaaaaatagttataaagttgtcaatggacaatgagaaatgcagaaccaaagccctcaaaactgctg |
30682224 |
T |
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| Q |
174 |
ctgaggtcaaaggtatgccaat |
195 |
Q |
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| T |
30682225 |
ctgaggtcaaaggtatgccaat |
30682246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 30715443 - 30715329
Alignment:
| Q |
74 |
cttagtaagctatatgtgaaatgacaaatacagcaaaaaatagttataaagttgtcaatggacagtgagaaatgcagaaccaaagccctcaaaactgctg |
173 |
Q |
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|||| |||| ||||||||||||| ||||||||||||||||| |||||||||||| ||||||| | || |||||||||| |||||||||||||||||||| |
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| T |
30715443 |
cttaataagttatatgtgaaatggcaaatacagcaaaaaatggttataaagttgcaaatggactgcgataaatgcagaaacaaagccctcaaaactgctg |
30715344 |
T |
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| Q |
174 |
ctgaggtcaaaggta |
188 |
Q |
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| T |
30715343 |
ctgaggtccaaggta |
30715329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 30688633 - 30688537
Alignment:
| Q |
92 |
aaatgacaaatacagcaaaaaatagttataaagttgtcaatggacagtgagaaatgcagaaccaaagccctcaaaactgctgctgaggtcaaaggta |
188 |
Q |
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| T |
30688633 |
aaatggcaaatacagcaaaagatagttataaagttgcaaatggattgtgagaaatgcagaaacaaagcactcaaaactgctgctgaggtcaaaggta |
30688537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 30733856 - 30733742
Alignment:
| Q |
74 |
cttagtaagctatatgtgaaatgacaaatacagcaaaaaatagttataaagttgtcaatggacagtgagaaatgcagaaccaaagccctcaaaactgctg |
173 |
Q |
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|||| |||||||||| |||||| |||||||||||||||| |||||||||||| ||||||| | || |||||||||| |||||| ||||| ||||||| |
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| T |
30733856 |
cttaataagctatattggaaatggtaaatacagcaaaaaatggttataaagttgcaaatggactgcgataaatgcagaaacaaagctctcaagactgctg |
30733757 |
T |
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| Q |
174 |
ctgaggtcaaaggta |
188 |
Q |
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|||||||| |||||| |
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| T |
30733756 |
ctgaggtccaaggta |
30733742 |
T |
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