View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_94 (Length: 238)
Name: NF3069_low_94
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_94 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 238
Target Start/End: Original strand, 10823393 - 10823625
Alignment:
| Q |
6 |
tgtttgctaaagcagcttcaagtttactaaacaaaccatagcacagttaccaatattaacagtaaacccttatgtttcacatattaacctcannnnnnnc |
105 |
Q |
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| T |
10823393 |
tgtttgctaaagcagcttcaagtttactaaacaaaccatagcacagttaccaatattaacagtaaacccttatatttcagacattaacctcatttttttc |
10823492 |
T |
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| Q |
106 |
tatcttaaaagagaaaagagaaataaaacgttaatatttcacatcatctatataatattaccctttttcaaaaacgtggaaaagccaaatttcactgaag |
205 |
Q |
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| T |
10823493 |
tatcttaaaagagaaaagagaaataaaacgttaatatttcacatcatctatataatattaccctttttcaaaaacgtggaaaagccaaatttcactgaag |
10823592 |
T |
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| Q |
206 |
acataagacaaacaaaccagaagacaagtttcc |
238 |
Q |
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| T |
10823593 |
acataagacaaacaaaccagaagacaagtttcc |
10823625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 36143947 - 36143849
Alignment:
| Q |
7 |
gtttgctaaagcagcttcaagtttactaaacaaaccatagcacagttacc--------aatattaacagtaaacccttatgtttcacatattaacctca |
97 |
Q |
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| T |
36143947 |
gtttgctaaagcagcttcaagtttactaaacaaaccatagcacaattaccaactatgtaatattaacagcaaacccttgtgtttcagacattaacctca |
36143849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 36143803 - 36143747
Alignment:
| Q |
117 |
agaaaagagaaataaaacgttaatatttcacatcatctatataatattacccttttt |
173 |
Q |
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| T |
36143803 |
agaaaagagaaagaaagcgttaatatttcacatcatatatataatattacccttttt |
36143747 |
T |
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