View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3069_low_99 (Length: 236)
Name: NF3069_low_99
Description: NF3069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3069_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 38606498 - 38606717
Alignment:
| Q |
1 |
aattaggttaagaatgaagaatgatattgatacgtacatcagcgtcaagaggatcttgaacgtagttttcttcagctgtttttcgattgttctcggcata |
100 |
Q |
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| T |
38606498 |
aattaggttaagaatgaagaatgatattgatacgtacatcagcgtcaagaggatcttgaacgtagttttcttcagctgtttttcgattgttctcggcata |
38606597 |
T |
|
| Q |
101 |
cagtaacctaccaaactcctcttcgctgaactccatattcaattcttcggtgatcgtnnnnnnnnnnnnnnnnnnngactccgcaactgcaactacgccg |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38606598 |
cagtaacctaccaaactcctcttcactgaactccatattcaattcttcggtgatcgtaacaaaaacaaaacaaaacgactccgcaactgcaactacgccg |
38606697 |
T |
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| Q |
201 |
caagcacggatactaagaac |
220 |
Q |
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|||||||||||||||||||| |
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| T |
38606698 |
caagcacggatactaagaac |
38606717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 7919106 - 7919015
Alignment:
| Q |
66 |
ttttcttcagctgtttttcgattgttctcggcatacagtaacctaccaaactcctcttcgctgaactccatattcaattcttcggtgatcgt |
157 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |
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| T |
7919106 |
ttttcttcagctgcttttcgattgttctcggcaaacagtaacctaccaaagtcctcttctgcaaactccatattcaattcttctatgatcgt |
7919015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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