View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070A-Insertion-1 (Length: 702)
Name: NF3070A-Insertion-1
Description: NF3070A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070A-Insertion-1 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 639; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 15 - 702
Target Start/End: Complemental strand, 46328384 - 46327698
Alignment:
| Q |
15 |
aatctaaaatttcagagctacaaagtttactatcatgctcttaaaaatacttttctaaaaagaaaggttaatatagatttgtggaaaacaaactgaggca |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328384 |
aatctaaaatttcagagctacaaagtttactatcatgctcttaaaaatacttttctaaaaagaaaggttaatatagatttgtggaaaacaaactgaggca |
46328285 |
T |
|
| Q |
115 |
tcatagaataaaaaattacaagttaaagtttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatct |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46328284 |
tcatagaataaaaaattacaagttaaagtttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatct |
46328185 |
T |
|
| Q |
215 |
tctgtgagccaagagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtga |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46328184 |
tctgtgagccaagagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttttccgagttgtga |
46328085 |
T |
|
| Q |
315 |
ggatatttttcatcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgataaagatatnnnnnnnctattatgatatag |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46328084 |
ggatatttttcatcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgataaagatataaaaaaactattatgatatag |
46327985 |
T |
|
| Q |
415 |
agatttataattacaacaattatgattcaaaatatgaggaatgatagggtccaattcgagtatcgttgcattccaaattttagagagggaagatacagct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46327984 |
agatttataattacaacaattatgattcaaaatatgaggaatgatagggtccaattcgagtatcgttgcattccaaattttagagagggaagatacagct |
46327885 |
T |
|
| Q |
515 |
aaaagaaaggagaatagactaacttcttaatttatacccattacgatatcatatgacgagtatataattaaaaccagtgcagacttgcaataaaacaact |
614 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46327884 |
aaaagaaaggaaaatagactaacttcttaatttatacccattatgatatcatatgacgagtatataattaaaaccagtgcagacttgcaataaaacaact |
46327785 |
T |
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| Q |
615 |
agaccctaatacattcagtattactctctaaagagaatgcacagtattycattctatattaagttgattgagtcatgcttgcttgtag |
702 |
Q |
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| T |
46327784 |
agaccctaatacattcagcattactctctaaagagaatgcacagtatt-cattctatattaagttgatcgagtcatgcttgcttgtag |
46327698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 387
Target Start/End: Complemental strand, 46323852 - 46323534
Alignment:
| Q |
72 |
aaaagaaaggttaatatagatttgtggaaaacaaactgaggcatcataga--ataaaaa-attacaagttaaagtttctatagtagttcaatcctccagt |
168 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||| | |||||| || ||| || |||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
46323852 |
aaaagaaatgtaaatatagatttgtggcaaacaatcagaggcaccacagagaatcaaaagattacaagttcaagtttctatagtagttcaatcctccaac |
46323753 |
T |
|
| Q |
169 |
aaagcctgttttctcaaatttagaaacaaaataagcaagatcatcttctgtgagccaagagggcaagttatcaggggtatccgggttgaacccagttcca |
268 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||||||| |
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| T |
46323752 |
aaagcccgttttctcaaatttggaaacaaaataagcaagatcatcttctgtgagccaagaaggcaatttgtcaggggtgtccgggttgaatccagttcca |
46323653 |
T |
|
| Q |
269 |
tactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtagtgccaacttcagccatctgagcttccattt |
368 |
Q |
| |
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|||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46323652 |
aactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttttcatcacatatgcagtgccaacttcagccatctgagcttccattt |
46323553 |
T |
|
| Q |
369 |
cgcccggttcctgtgataa |
387 |
Q |
| |
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|||||||||||||||||| |
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| T |
46323552 |
tgcccggttcctgtgataa |
46323534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 129 - 386
Target Start/End: Original strand, 46530587 - 46530844
Alignment:
| Q |
129 |
attacaagttaaagtttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatcttctgtgagccaaga |
228 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||| || |||||||| |||||||| |
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| T |
46530587 |
attacacgttaaagtttctatagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagcaaggtcttcttctgtaagccaaga |
46530686 |
T |
|
| Q |
229 |
gggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatc |
328 |
Q |
| |
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||| ||| | ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
46530687 |
gggtaaggtgtcaggagtatccgggttgaatccagttccatactctcccttgggaaatattgggggaccagtttggcgagttgtgaggatatttttcatc |
46530786 |
T |
|
| Q |
329 |
acatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgata |
386 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
46530787 |
acatatgcagtgccaacttcagccatctcagcttccattttgcctggttcctgtgata |
46530844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 124 - 386
Target Start/End: Original strand, 46523154 - 46523416
Alignment:
| Q |
124 |
aaaaaattacaagttaaagtttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatcttctgtgagc |
223 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| || |||||||||| ||| ||||||||||| ||| |
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| T |
46523154 |
aaaagattacaagttaaagtttctgtagtagttcaatgctccagtgaagcctgttttctcaaatttggagacaaaataagtaaggtcatcttctgtaagc |
46523253 |
T |
|
| Q |
224 |
caagagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttt |
323 |
Q |
| |
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|||||||| ||| | ||||| ||||| | |||||| ||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||| |
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|
| T |
46523254 |
caagagggtaaggtgtcaggagtatctgagttgaatccagttccaaactctcccttgggaaatattggaggaccagttttccgagttgtgagggtacttt |
46523353 |
T |
|
| Q |
324 |
tcatcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgata |
386 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||| |
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|
| T |
46523354 |
tcatcacatatgcagtgccaacttcagccatctcagcttccattttgcctggttcctgtgata |
46523416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 126 - 392
Target Start/End: Original strand, 46519612 - 46519878
Alignment:
| Q |
126 |
aaaattacaagttaaagtttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatcttctgtgagcca |
225 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||| || ||||||||||||||||| |||||||||||||| |
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| T |
46519612 |
aaaattacaagttaaagtttctatagtaattcaatcctccagtgaagccagtcttctcatatttggagacaaaataagcaagatcgtcttctgtgagcca |
46519711 |
T |
|
| Q |
226 |
agagggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttc |
325 |
Q |
| |
|
|| ||||||| | || ||||||||||| ||||| || |||||| ||||||| ||||||| ||||||||||||||| | ||||||||||||| ||||||| |
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|
| T |
46519712 |
agtgggcaaggtttctggggtatccggattgaatcctgttccaaactctcctttgggaagtattggaggaccagttttgcgagttgtgaggacatttttc |
46519811 |
T |
|
| Q |
326 |
atcacatatgtagtgccaacttcagccatctgagcttccatttcgcccggttcctgtgataaagata |
392 |
Q |
| |
|
| |||||||| ||||||||| ||||| |||| |||||| |||| ||| ||||||||| ||| ||||| |
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| T |
46519812 |
agcacatatgcagtgccaacctcagctatctcagcttctattttgccaggttcctgtaatatagata |
46519878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 142 - 368
Target Start/End: Original strand, 46464376 - 46464605
Alignment:
| Q |
142 |
gtttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatcttct---gtgagccaagagggcaagtta |
238 |
Q |
| |
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|||||| ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| || |||||| || |||||||||| |||| | |
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| T |
46464376 |
gtttctgtagtaattcaatcctccagtgaagcctgttttgtcaaatttagagacaaagtaagcaaggtcgtcttcttctgtaagccaagaggacaaggtg |
46464475 |
T |
|
| Q |
239 |
tcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggaccagttctccgagttgtgaggatatttttcatcacatatgtag |
338 |
Q |
| |
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| ||| ||||||||||||| |||||||| ||||| || ||||||| |||||||||||| || ||| ||||||||||||||||||| |||||| | | |
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|
| T |
46464476 |
tatgggatatccgggttgaatccagttccgtactcgccgttgggaagcattggaggaccaatttcccgtgttgtgaggatatttttcagcacataagcgg |
46464575 |
T |
|
| Q |
339 |
tgccaacttcagccatctgagcttccattt |
368 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |
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| T |
46464576 |
tgccaacttcaaccatcttagcttccattt |
46464605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 130 - 297
Target Start/End: Complemental strand, 88830 - 88663
Alignment:
| Q |
130 |
ttacaagttaaagtttctatagtagttcaatcctccagtaaagcctgttttctcaaatttagaaacaaaataagcaagatcatcttctgtgagccaagag |
229 |
Q |
| |
|
||||||| | || ||||||||||||||||| |||||||| ||||| ||||| | ||||||| |||| ||||| ||||||| ||||| | |||||||| |
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|
| T |
88830 |
ttacaagctcaaatttctatagtagttcaaccctccagtgaagccagttttgttgaatttagtaacataataatcaagatcttcttcggaaagccaagat |
88731 |
T |
|
| Q |
230 |
ggcaagttatcaggggtatccgggttgaacccagttccatactctcccttgggaaaaattggaggacc |
297 |
Q |
| |
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|| ||| |||| || ||||||| ||||| ||||||||||||||||| || || |||||||||||||| |
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| T |
88730 |
ggtaagatatctggcatatccggattgaatccagttccatactctccttttgggaaaattggaggacc |
88663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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