View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3070A-Insertion-3 (Length: 474)

Name: NF3070A-Insertion-3
Description: NF3070A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3070A-Insertion-3
NF3070A-Insertion-3
[»] chr8 (10 HSPs)
chr8 (7-466)||(8209763-8210221)
chr8 (42-160)||(37492373-37492487)
chr8 (413-458)||(39972198-39972243)
chr8 (416-455)||(6237489-6237528)
chr8 (412-455)||(33741523-33741566)
chr8 (417-456)||(39491855-39491894)
chr8 (413-459)||(17319999-17320045)
chr8 (401-455)||(43819544-43819598)
chr8 (413-458)||(31596467-31596512)
chr8 (419-455)||(12221032-12221068)
[»] chr6 (7 HSPs)
chr6 (43-342)||(27775389-27775687)
chr6 (401-441)||(8053186-8053226)
chr6 (177-265)||(11077255-11077343)
chr6 (412-458)||(27127553-27127599)
chr6 (412-458)||(28014652-28014698)
chr6 (412-458)||(34780024-34780070)
chr6 (409-453)||(28541970-28542014)
[»] chr3 (14 HSPs)
chr3 (178-336)||(27289050-27289209)
chr3 (39-94)||(27289251-27289306)
chr3 (401-458)||(15502682-15502739)
chr3 (403-455)||(21195328-21195380)
chr3 (412-458)||(34060812-34060858)
chr3 (403-452)||(23528099-23528148)
chr3 (409-458)||(33641266-33641315)
chr3 (424-459)||(32070678-32070713)
chr3 (412-457)||(18834-18879)
chr3 (412-457)||(18975-19020)
chr3 (414-459)||(6822844-6822889)
chr3 (412-461)||(46160529-46160578)
chr3 (413-458)||(49976187-49976232)
chr3 (414-458)||(15005825-15005869)
[»] chr1 (11 HSPs)
chr1 (401-455)||(11803414-11803468)
chr1 (408-456)||(894943-894991)
chr1 (418-458)||(27210748-27210788)
chr1 (403-459)||(39323412-39323468)
chr1 (412-458)||(14331854-14331900)
chr1 (404-446)||(35112147-35112189)
chr1 (412-458)||(41898902-41898948)
chr1 (408-449)||(6388932-6388973)
chr1 (414-455)||(46289632-46289673)
chr1 (414-458)||(32268028-32268072)
chr1 (414-458)||(51046687-51046731)
[»] chr7 (12 HSPs)
chr7 (412-457)||(6548547-6548592)
chr7 (412-456)||(5977763-5977807)
chr7 (420-458)||(1910269-1910307)
chr7 (412-458)||(4686089-4686135)
chr7 (420-458)||(29687501-29687539)
chr7 (413-455)||(34835882-34835924)
chr7 (404-458)||(48705640-48705694)
chr7 (414-459)||(34111877-34111922)
chr7 (416-448)||(32854107-32854139)
chr7 (415-455)||(40774291-40774331)
chr7 (412-456)||(43189685-43189729)
chr7 (412-452)||(46478607-46478647)
[»] chr2 (6 HSPs)
chr2 (388-458)||(2239574-2239645)
chr2 (412-459)||(34220691-34220738)
chr2 (414-459)||(10740441-10740486)
chr2 (412-456)||(747539-747583)
chr2 (412-456)||(13997952-13997996)
chr2 (413-453)||(30831636-30831676)
[»] scaffold2122 (1 HSPs)
scaffold2122 (412-458)||(664-710)
[»] scaffold0101 (1 HSPs)
scaffold0101 (413-459)||(11092-11138)
[»] chr5 (10 HSPs)
chr5 (412-458)||(28992950-28992996)
chr5 (412-458)||(28996230-28996276)
chr5 (412-456)||(3242001-3242045)
chr5 (401-457)||(20184595-20184651)
chr5 (401-455)||(37307619-37307674)
chr5 (412-458)||(678467-678513)
chr5 (401-434)||(6920440-6920473)
chr5 (420-453)||(19087031-19087064)
chr5 (413-458)||(19894836-19894881)
chr5 (412-452)||(3015102-3015142)
[»] chr4 (9 HSPs)
chr4 (412-458)||(35927320-35927366)
chr4 (403-456)||(37771154-37771206)
chr4 (412-456)||(35675238-35675282)
chr4 (403-459)||(55465507-55465562)
chr4 (412-446)||(32584577-32584611)
chr4 (412-458)||(46823489-46823535)
chr4 (413-458)||(42627145-42627189)
chr4 (413-458)||(52937292-52937337)
chr4 (412-456)||(44478718-44478762)
[»] scaffold0169 (1 HSPs)
scaffold0169 (414-458)||(9054-9098)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 7 - 466
Target Start/End: Original strand, 8209763 - 8210221
Alignment:
Q  7 aaaagataagtttgtacgcttcataaaggaggttctaaaattcttacatcatagaaactttgattaaaactaaaattagtcaatcaatcgacacatttt- 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||     
T  8209763 aaaagataagtttgtacgcttcataaaggagattctaaaattcttacatcatagaaactatgattaaaattaaaattagtcaatcaatcgacacattttt 8209862  T
Q  106 -ttccattgcgccgggtgtgcttaaaagcaatattgtcatgcaagatagcgagatcatgaatacggtggactaagataggggtgtgtatgttaagtttac 204  Q
     |||||||||  ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8209863 tttccattgcatcgggtgtgcttaaaagcaatattatcatgtaagatagcgagatcatgaatacggtagactaagataggggtgtgtatgttaagtttac 8209962  T
Q  205 aattccttgttaccatatcgattagaagtttggagtcactctaaactatgagatgagtaaaactttcttatttgtcatttgcatttccatgtacataccc 304  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8209963 aattccttattaccatatcgattagaagtttggagtcactctcaactataagatgagtaaaactttcttatttgtcatttgcatttccatgtacataccc 8210062  T
Q  305 cacatttcagtatgaagggcatcacaatctccatttctagtatactttctaagaaaacttgttt-tttaagaaagttaaaacttaaaagtagtta-tatg 402  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     |||||| ||||    
T  8210063 cacatttcagtatgaagggcgtcacaatctccatttctagtatactttctaagaaaacttgtttgttaaagaaagttaaaactt-----tagttattatg 8210157  T
Q  403 tattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcaccaccttcaac 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8210158 tattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcaccactttcaac 8210221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 37492373 - 37492487
Alignment:
Q  42 taaaattcttacatcatagaaactttgattaaaactaaaattagtcaatcaatcgacacattt-tttccattgcgccgggtgtgcttaaaagcaatattg 140  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||||| ||| | | || |     |||||||||||||||||||    
T  37492373 taaaattcttacattatagaaactttaattaaaactaaaattagtcaaccaatcaacacatttattttcctcgcac-----gtgcttaaaagcaatattg 37492467  T
Q  141 tcatgcaagatagcgagatc 160  Q
    ||||| |||| | |||||||    
T  37492468 tcatgtaagacaacgagatc 37492487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 39972243 - 39972198
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||    
T  39972243 aacaattttttaacttttaaaaagtcaaattcatcacttttcacca 39972198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 6237489 - 6237528
Alignment:
Q  416 aattttttaacttttaaaaagttgaattcatcatttttca 455  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  6237489 aatttttcaacttttaaaaagttgaattcagcatttttca 6237528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 455
Target Start/End: Complemental strand, 33741566 - 33741523
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttca 455  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||    
T  33741566 caacaatattttaacttttaaaaagttaaatttatcatttttca 33741523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 456
Target Start/End: Complemental strand, 39491894 - 39491855
Alignment:
Q  417 attttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  39491894 attttttaacttttaaaaagttaaattcatcacttttcac 39491855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 17320045 - 17319999
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttcaccac 459  Q
    |||||| ||||||||||||||||||| ||||||||  ||||||||||    
T  17320045 aacaatattttaacttttaaaaagttaaattcatctcttttcaccac 17319999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 455
Target Start/End: Original strand, 43819544 - 43819598
Alignment:
Q  401 tgtattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttca 455  Q
    |||||||||||  |||| ||||| ||||||| ||||||||||||| |||||||||    
T  43819544 tgtattagaaattacaactttttgacttttagaaagttgaattcaacatttttca 43819598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 31596512 - 31596467
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||| |||| |||||||||||||  |||||||||||||||||||    
T  31596512 aacaatattttgacttttaaaaagtaaaattcatcatttttcacca 31596467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 12221032 - 12221068
Alignment:
Q  419 tttttaacttttaaaaagttgaattcatcatttttca 455  Q
    |||| |||||||||||||||||||||| |||||||||    
T  12221032 ttttaaacttttaaaaagttgaattcaacatttttca 12221068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 2e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 43 - 342
Target Start/End: Complemental strand, 27775687 - 27775389
Alignment:
Q  43 aaaattcttacatcatagaaactttgattaaaactaaaattagtcaatcaatcgacacattt-tttccattgcgccgggtgtgcttaaaagcaatattgt 141  Q
    |||||||||||||||||  || ||| ||||||||||||||||||||| ||||| |||||||| ||||    ||| |  |||||||||  | ||||||| |    
T  27775687 aaaattcttacatcataagaattttaattaaaactaaaattagtcaaccaatcaacacatttgtttctcgcgcggcatgtgtgcttagtaacaatatttt 27775588  T
Q  142 catgcaagatagcgagatcatgaatacggtggactaagataggggtgtgtatgttaagtttacaattccttgttaccatatcgattagaagtttggagtc 241  Q
    |||| ||||| |||||||| ||||||||| |||| ||||||||||||| ||  ||||| |||||| ||| | ||||||||||||||||||| |  |||||    
T  27775587 catgtaagatggcgagatcctgaatacggcggaccaagataggggtgtcta--ttaagcttacaactcc-tattaccatatcgattagaagctcagagtc 27775491  T
Q  242 actctaaactatgagatgagtaaaa-ctttcttatttgtcatttgcatttccatgtacataccccacatttcagtatgaagggcatcacaatctccattt 340  Q
    ||||| |||||||| |||||||||| ||||| |||||||||||||||||    |||| |||||||| ||||||| |||||||||||||||||||||| ||    
T  27775490 actctcaactatgaaatgagtaaaatctttcctatttgtcatttgcattcatgtgtagataccccatatttcagcatgaagggcatcacaatctccaatt 27775391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 8053186 - 8053226
Alignment:
Q  401 tgtattagaaacaacaattttttaacttttaaaaagttgaa 441  Q
    |||||| |||| |||||||||||||||||||||||||||||    
T  8053186 tgtattggaaataacaattttttaacttttaaaaagttgaa 8053226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 265
Target Start/End: Complemental strand, 11077343 - 11077255
Alignment:
Q  177 aagataggggtgtgtatgttaagtttacaattccttgttaccatatcgattagaagtttggagtcactctaaactatgagatgagtaaa 265  Q
    ||||||||| ||| | ||||| | |||||| ||  ||||||| |||| |||||||||||| |||||| || ||||||||| ||||||||    
T  11077343 aagatagggatgtttctgttatgcttacaactctctgttaccgtatcaattagaagtttgtagtcaccctcaactatgaggtgagtaaa 11077255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 27127599 - 27127553
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||| | || |||||||||||||| |||||||||||||||||||    
T  27127599 caacaatatcttgacttttaaaaagttaaattcatcatttttcacca 27127553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 28014652 - 28014698
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||| ||||||||||||||||||  || ||||||||||||||||    
T  28014652 caacaatattttaacttttaaaaagtcaaactcatcatttttcacca 28014698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 34780070 - 34780024
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||| ||||||||||||||||||| ||||| ||| |||||||||    
T  34780070 caacaatgttttaacttttaaaaagttaaattcttcacttttcacca 34780024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 28541970 - 28542014
Alignment:
Q  409 aaacaacaattttttaacttttaaaaagttgaattcatcattttt 453  Q
    |||| ||||||||  ||||||||||||||||||||||||| ||||    
T  28541970 aaactacaattttcaaacttttaaaaagttgaattcatcactttt 28542014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 336
Target Start/End: Complemental strand, 27289209 - 27289050
Alignment:
Q  178 agataggggtgtgtatgttaagtttacaattccttgttaccatatcgattagaagtttggagtcactctaaactatgagatgagtaaaa-ctttcttatt 276  Q
    ||||||||||||||  |||||  ||| || |||||||||  ||||||||||||| ||| |||||||||| ||||||||| ||||||||| ||| | ||||    
T  27289209 agataggggtgtgtgcgttaaacttataactccttgttattatatcgattagaaattttgagtcactctcaactatgaggtgagtaaaatcttccatatt 27289110  T
Q  277 tgtcatttgcatttccatgtacataccccacatttcagtatgaagggcatcacaatctcc 336  Q
    |||||||| ||||  | ||| |||| | |||||||||  ||||||| |||||||||||||    
T  27289109 tgtcatttacattctcgtgtccatatcacacatttcaacatgaaggacatcacaatctcc 27289050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 27289306 - 27289251
Alignment:
Q  39 ttctaaaattcttacatcatagaaactttgattaaaactaaaattagtcaatcaat 94  Q
    |||| ||||||| ||||||||| || ||||||||||||||||||||||||||||||    
T  27289306 ttcttaaattctcacatcataggaattttgattaaaactaaaattagtcaatcaat 27289251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 15502739 - 15502682
Alignment:
Q  401 tgtattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||| ||||  |||||||||||||||||||||||||||||||| ||||||| ||||    
T  15502739 tgtattggaaattacaattttttaacttttaaaaagttgaattcaacattttttacca 15502682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 403 - 455
Target Start/End: Complemental strand, 21195380 - 21195328
Alignment:
Q  403 tattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttca 455  Q
    |||| |||| ||||||||||||||||||||||||||||||||| || ||||||    
T  21195380 tattggaaataacaattttttaacttttaaaaagttgaattcaccacttttca 21195328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 34060858 - 34060812
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||||    
T  34060858 caacaatattttaacttttaaaaagttaaattcatcacttttcacca 34060812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 23528148 - 23528099
Alignment:
Q  403 tattagaaacaacaattttttaacttttaaaaagttgaattcatcatttt 452  Q
    |||| ||||| ||||||||  |||||||||||||||||||||||||||||    
T  23528148 tattggaaactacaattttcaaacttttaaaaagttgaattcatcatttt 23528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 33641266 - 33641315
Alignment:
Q  409 aaacaacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||| ||||||||  |||||||||||||||||||| ||||||||||||||    
T  33641266 aaactacaattttaaaacttttaaaaagttgaatttatcatttttcacca 33641315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 459
Target Start/End: Original strand, 32070678 - 32070713
Alignment:
Q  424 aacttttaaaaagttgaattcatcatttttcaccac 459  Q
    ||||||||||||||||||||||||| ||||||||||    
T  32070678 aacttttaaaaagttgaattcatcacttttcaccac 32070713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 18879 - 18834
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacc 457  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||||    
T  18879 caacaatattttaatttttaaaaagttaaattcatcacttttcacc 18834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 19020 - 18975
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacc 457  Q
    ||||||| |||||| |||||||||||| ||||||||| ||||||||    
T  19020 caacaatattttaatttttaaaaagttaaattcatcacttttcacc 18975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 6822889 - 6822844
Alignment:
Q  414 acaattttttaacttttaaaaagttgaattcatcatttttcaccac 459  Q
    ||||||||  ||||||||||||||||||||||||| |||| |||||    
T  6822889 acaattttaaaacttttaaaaagttgaattcatcactttttaccac 6822844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 461
Target Start/End: Original strand, 46160529 - 46160578
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcaccacct 461  Q
    ||||||||||||||| ||| |||||||  |||||||| ||||||||||||    
T  46160529 caacaattttttaaccttttaaaagttacattcatcacttttcaccacct 46160578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 49976232 - 49976187
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||| |||| |||||||||||||| ||||||||| |||||||||    
T  49976232 aacaatattttgacttttaaaaagttaaattcatcacttttcacca 49976187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 15005825 - 15005869
Alignment:
Q  414 acaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||||||||||||||| ||||||||||||| || |||| ||||    
T  15005825 acaattttttaacttttacaaagttgaattcaacactttttacca 15005869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 401 - 455
Target Start/End: Complemental strand, 11803468 - 11803414
Alignment:
Q  401 tgtattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttca 455  Q
    |||||| |||| |||||| |||||||||||||||||||||||||| |||||||||    
T  11803468 tgtattggaaataacaatgttttaacttttaaaaagttgaattcaccatttttca 11803414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 894943 - 894991
Alignment:
Q  408 gaaacaacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    ||||| ||||||||  ||||||||||||||||||||||||| |||||||    
T  894943 gaaactacaattttcaaacttttaaaaagttgaattcatcacttttcac 894991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 458
Target Start/End: Original strand, 27210748 - 27210788
Alignment:
Q  418 ttttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  27210748 ttttttaacttttaaaaagttaaattgatcatttttcacca 27210788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 459
Target Start/End: Original strand, 39323412 - 39323468
Alignment:
Q  403 tattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcaccac 459  Q
    |||||||||| ||||||||  ||||||||||| ||||||||||||| |||| |||||    
T  39323412 tattagaaactacaattttcaaacttttaaaatgttgaattcatcactttttaccac 39323468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 14331854 - 14331900
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||| |||| |||||||||||||| ||||| |||||||||||||    
T  14331854 caacaatgttttgacttttaaaaagttaaattcttcatttttcacca 14331900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 446
Target Start/End: Complemental strand, 35112189 - 35112147
Alignment:
Q  404 attagaaacaacaattttttaacttttaaaaagttgaattcat 446  Q
    |||||||| |||||||||||||||||||||||  |||||||||    
T  35112189 attagaaataacaattttttaacttttaaaaaactgaattcat 35112147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 41898948 - 41898902
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  41898948 caacaatattttaacttttaaaaagttaaattcatcactttttacca 41898902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 6388932 - 6388973
Alignment:
Q  408 gaaacaacaattttttaacttttaaaaagttgaattcatcat 449  Q
    |||| |||||||||||||||| ||| ||||||||||||||||    
T  6388932 gaaataacaattttttaacttgtaataagttgaattcatcat 6388973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 46289673 - 46289632
Alignment:
Q  414 acaattttttaacttttaaaaagttgaattcatcatttttca 455  Q
    |||| ||||||||||||||||||| ||||||| |||||||||    
T  46289673 acaactttttaacttttaaaaagtcgaattcaacatttttca 46289632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 32268028 - 32268072
Alignment:
Q  414 acaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||||||| ||||||| ||||||||||||| || |||||||||    
T  32268028 acaattttttgacttttagaaagttgaattcaacacttttcacca 32268072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 51046731 - 51046687
Alignment:
Q  414 acaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||| ||||| ||||||||||||||||||||| || |||||||||    
T  51046731 acaactttttgacttttaaaaagttgaattcaacacttttcacca 51046687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 457
Target Start/End: Original strand, 6548547 - 6548592
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacc 457  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||    
T  6548547 caacaatattttaacttttaaaaagttaaattcatcatttttcacc 6548592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 5977807 - 5977763
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||    
T  5977807 caacaattttttaacttttaaaaagttaaatccatcacttttcac 5977763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 1910269 - 1910307
Alignment:
Q  420 ttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  1910269 ttttaacttttaaaaagttaaatttatcatttttcacca 1910307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 4686135 - 4686089
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||| ||||||||||||||||||||| |||| |||| |||||||||    
T  4686135 caacacttttttaacttttaaaaagttaaattaatcacttttcacca 4686089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 29687501 - 29687539
Alignment:
Q  420 ttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  29687501 ttttaacttttaaaaagttaaattcatcacttttcacca 29687539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 455
Target Start/End: Original strand, 34835882 - 34835924
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttca 455  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||    
T  34835882 aacaatattttaacttttaaaaagttaaattcttcatttttca 34835924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 458
Target Start/End: Original strand, 48705640 - 48705694
Alignment:
Q  404 attagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||  |||| ||||||||||||| ||||||||||||| || |||||||||    
T  48705640 attagaaattacaactttttaacttttagaaagttgaattcaacacttttcacca 48705694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 34111922 - 34111877
Alignment:
Q  414 acaattttttaacttttaaaaagttgaattcatcatttttcaccac 459  Q
    ||||||||| ||||||||||||||||||| | |||||||| |||||    
T  34111922 acaatttttaaacttttaaaaagttgaatccttcattttttaccac 34111877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 448
Target Start/End: Original strand, 32854107 - 32854139
Alignment:
Q  416 aattttttaacttttaaaaagttgaattcatca 448  Q
    ||||||| |||||||||||||||||||||||||    
T  32854107 aatttttaaacttttaaaaagttgaattcatca 32854139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 40774331 - 40774291
Alignment:
Q  415 caattttttaacttttaaaaagttgaattcatcatttttca 455  Q
    |||| ||||||||||||||||||| ||||||||| ||||||    
T  40774331 caatattttaacttttaaaaagttaaattcatcaattttca 40774291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 43189729 - 43189685
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    ||||||| ||||||||||||||||||  ||||||||| |||||||    
T  43189729 caacaatattttaacttttaaaaagtcaaattcatcacttttcac 43189685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 46478647 - 46478607
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttt 452  Q
    ||||||| ||||||||||||||||||| |||| ||||||||    
T  46478647 caacaatattttaacttttaaaaagttaaatttatcatttt 46478607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 2239574 - 2239645
Alignment:
Q  388 aaaagtagt-tatatgtattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||| ||| |||||| ||  ||||||| ||||||||||||||||||| |||||||||||||| ||||    
T  2239574 aaaagtagtatatttgtattggattcaacaatattttaacttttaaaaagttaaattcatcattttttacca 2239645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 34220738 - 34220691
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcaccac 459  Q
    ||||||| |||||||||||||||| || ||||||||| ||||||||||    
T  34220738 caacaatattttaacttttaaaaacttaaattcatcacttttcaccac 34220691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 10740486 - 10740441
Alignment:
Q  414 acaattttttaacttttaaaaagttgaattcatcatttttcaccac 459  Q
    ||||||||| |||||||||||| |||||||||||| |||| |||||    
T  10740486 acaatttttaaacttttaaaaaattgaattcatcactttttaccac 10740441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 747583 - 747539
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    ||||||||||||||||||||||||||| |||  |||| |||||||    
T  747583 caacaattttttaacttttaaaaagttaaatctatcacttttcac 747539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 13997996 - 13997952
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    ||||||| |||||| |||||||||||| |||| ||||||||||||    
T  13997996 caacaatattttaatttttaaaaagttaaatttatcatttttcac 13997952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 453
Target Start/End: Original strand, 30831636 - 30831676
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcattttt 453  Q
    |||||| |||| |||||||||||||| ||||||||||||||    
T  30831636 aacaatatttttacttttaaaaagttaaattcatcattttt 30831676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2122 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold2122
Description:

Target: scaffold2122; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 710 - 664
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||    
T  710 caacaattttttaacttttaaaaagttgaattcacaacttttcacca 664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 459
Target Start/End: Complemental strand, 11138 - 11092
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttcaccac 459  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||||    
T  11138 aacaatattttaacttttaaaaagttaaattcatcttttttcaccac 11092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 28992950 - 28992996
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||    
T  28992950 caacaattttttaacttttaaaaagttgaattcacaacttttcacca 28992996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 28996230 - 28996276
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||    
T  28996230 caacaattttttaacttttaaaaagttgaattcacaacttttcacca 28996276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 3242045 - 3242001
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||    
T  3242045 caacaatattttaacttttaaaaagtttaattcatcaattttcac 3242001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 457
Target Start/End: Complemental strand, 20184651 - 20184595
Alignment:
Q  401 tgtattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcacc 457  Q
    |||||||||  ||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  20184651 tgtattagattcaacaatgttttaacttttaaaaagtgaaattcatcacttttcacc 20184595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 455
Target Start/End: Original strand, 37307619 - 37307674
Alignment:
Q  401 tgtattagaaacaacaat-tttttaacttttaaaaagttgaattcatcatttttca 455  Q
    |||||||||| ||| ||| |||||||||||||||||| | ||||||||||||||||    
T  37307619 tgtattagaatcaataatatttttaacttttaaaaaggtaaattcatcatttttca 37307674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 678467 - 678513
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||||||||||||||||| ||| ||||||| | |||||||||    
T  678467 caacaattttttaacttttaaaaggttaaattcattacttttcacca 678513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Original strand, 6920440 - 6920473
Alignment:
Q  401 tgtattagaaacaacaattttttaacttttaaaa 434  Q
    ||||||||||||||||||| ||||||||||||||    
T  6920440 tgtattagaaacaacaattatttaacttttaaaa 6920473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 19087031 - 19087064
Alignment:
Q  420 ttttaacttttaaaaagttgaattcatcattttt 453  Q
    |||||||||||||||||||||||||| |||||||    
T  19087031 ttttaacttttaaaaagttgaattcaccattttt 19087064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Original strand, 19894836 - 19894881
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||| ||||||||||||||||||| |||||||||| ||| ||||    
T  19894836 aacaatattttaacttttaaaaagttaaattcatcatatttaacca 19894881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 452
Target Start/End: Complemental strand, 3015142 - 3015102
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttt 452  Q
    ||||||| ||||||||||||||||||| |||| ||||||||    
T  3015142 caacaatattttaacttttaaaaagttaaattaatcatttt 3015102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 458
Target Start/End: Complemental strand, 35927366 - 35927320
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  35927366 caacaatattttaacttttaaaaagttaaattcatcgtttttcacca 35927320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 37771206 - 37771154
Alignment:
Q  403 tattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    ||||||||  |||||||||||| |||||||||||| ||||||||||||||||||    
T  37771206 tattagaataaacaatttttta-cttttaaaaagtagaattcatcatttttcac 37771154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 35675282 - 35675238
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||    
T  35675282 caacaatattttaacttttaaaaagttaaattcatcacttttcac 35675238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 55465562 - 55465507
Alignment:
Q  403 tattagaaacaacaattttttaacttttaaaaagttgaattcatcatttttcaccac 459  Q
    |||||||||| ||||||||  ||||||||||| |||||||||||||||||| |||||    
T  55465562 tattagaaactacaatttta-aacttttaaaatgttgaattcatcattttttaccac 55465507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 446
Target Start/End: Complemental strand, 32584611 - 32584577
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcat 446  Q
    ||||||| |||||||||||||||||||||||||||    
T  32584611 caacaatattttaacttttaaaaagttgaattcat 32584577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 46823489 - 46823535
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||||||||| |||||||||||||| ||||||| | |||||||||    
T  46823489 caacaattttttgacttttaaaaagttaaattcataacttttcacca 46823535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 42627189 - 42627145
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    ||||||||||||| |||||||||||| ||||||||||| |||||||    
T  42627189 aacaattttttaa-ttttaaaaagttaaattcatcattcttcacca 42627145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 52937337 - 52937292
Alignment:
Q  413 aacaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||||| ||||||||||||| ||| ||||||| |||||||||||    
T  52937337 aacaatttattaacttttaaaatgttaaattcattatttttcacca 52937292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 44478718 - 44478762
Alignment:
Q  412 caacaattttttaacttttaaaaagttgaattcatcatttttcac 456  Q
    |||||||||||| |||||||||||||| ||| ||| |||||||||    
T  44478718 caacaatttttttacttttaaaaagttaaatccattatttttcac 44478762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 9098 - 9054
Alignment:
Q  414 acaattttttaacttttaaaaagttgaattcatcatttttcacca 458  Q
    |||||||||| ||||||||||||||||||||| || |||||||||    
T  9098 acaattttttgacttttaaaaagttgaattcaacacttttcacca 9054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University