View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3070A-Insertion-6 (Length: 435)

Name: NF3070A-Insertion-6
Description: NF3070A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3070A-Insertion-6
NF3070A-Insertion-6
[»] chr5 (1 HSPs)
chr5 (8-435)||(37027010-37027437)
[»] chr7 (9 HSPs)
chr7 (182-248)||(17848945-17849011)
chr7 (178-256)||(31140397-31140475)
chr7 (178-256)||(31153412-31153490)
chr7 (182-248)||(17825727-17825793)
chr7 (178-256)||(31058594-31058672)
chr7 (194-256)||(31103054-31103116)
chr7 (178-230)||(31215834-31215886)
chr7 (184-251)||(15676702-15676769)
chr7 (167-256)||(16172959-16173048)
[»] chr1 (3 HSPs)
chr1 (184-245)||(14522256-14522317)
chr1 (178-245)||(14504395-14504462)
chr1 (178-245)||(14468216-14468283)
[»] scaffold0289 (2 HSPs)
scaffold0289 (184-251)||(5194-5261)
scaffold0289 (184-251)||(14027-14094)


Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 435
Target Start/End: Original strand, 37027010 - 37027437
Alignment:
Q  8 ataataacacaaaaagtaaaaacaaaagtacgaaattggaattatgtactgctttgattattctatttcttgtagtcttcctggttcgtggctctttaca 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37027010 ataataacacaaaaagtaaaaacaaaagtgcgaaattggaattatgtattgctttgattattctatttcttgtagtcttcctggttcgtggctctttaca 37027109  T
Q  108 tattcatttgccaaaagcaagaaaaattcaaaagcaagctagagaagaacaagaacaaactcaagatattttttccatatggagttatgatggaaaaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37027110 tattcatttgccaaaagcaagaaaaattcaaaagcaagctagagaagaacaagaacaaactcaagatattttttccatatggagttatgatggaaaaatg 37027209  T
Q  208 gtttatgaaaatatcattgaagccacagaggattttgatgacaaatatcgaattggtgaaggaggttctggttctgtttacaaggccaatttaccttctg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37027210 gtttatgaaaatatcattgaagccacagaggattttgatgacaaatatcgaattggtgaaggaggttctggttctgtttacaaggccaatttaccttctg 37027309  T
Q  308 gccaagttgttgctgtgaaaaaacttcatgctgaagttgatggtgaaatgcacaatttcaaggcttttactaatgaggttaaagcattgacacaaatcaa 407  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37027310 gccaagttattgctgtgaaaaaacttcatgctgaagttgatggtgaaatgcacaatttcaaggcttttactaatgaggttaaagcattgacacaaatcaa 37027409  T
Q  408 acatcgtaacattgtgaagttatatgga 435  Q
    ||||||||||||||||||||||||||||    
T  37027410 acatcgtaacattgtgaagttatatgga 37027437  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 17848945 - 17849011
Alignment:
Q  182 ccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatga 248  Q
    |||||||||||| ||||||||||||||| ||||| | ||| |||||||||||||| |||||||||||    
T  17848945 ccatatggagttttgatggaaaaatggtgtatgagagtattattgaagccacagaagattttgatga 17849011  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 31140397 - 31140475
Alignment:
Q  178 ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatgacaaatatc 256  Q
    |||||||| |||||| ||||||| |||||| | | |||||||||||||||||| || ||| ||||||||||||||||||    
T  31140397 ttttccatttggagtcatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatgacaaatatc 31140475  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 31153412 - 31153490
Alignment:
Q  178 ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatgacaaatatc 256  Q
    |||||||| |||||| ||||||| |||||| | | |||||||||||||||||| || ||| ||||||||||||||||||    
T  31153412 ttttccatttggagtcatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatgacaaatatc 31153490  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 17825793 - 17825727
Alignment:
Q  182 ccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatga 248  Q
    |||||||||||| |||||  |||||||| ||||| ||||| ||| |||||||||| |||||||||||    
T  17825793 ccatatggagttttgatgacaaaatggtgtatgagaatattattcaagccacagacgattttgatga 17825727  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 31058594 - 31058672
Alignment:
Q  178 ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatgacaaatatc 256  Q
    |||||||| |||||| |||||||||||||| | | ||||||||| |||||||| || |   ||||||||||||||||||    
T  31058594 ttttccatttggagtcatgatggaaaaatgatgtttgaaaatattattgaagctactgcaaattttgatgacaaatatc 31058672  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 31103054 - 31103116
Alignment:
Q  194 atgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatgacaaatatc 256  Q
    ||||||| |||||| | | |||||||||||||||||| || ||| ||||||||||||||||||    
T  31103054 atgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatgacaaatatc 31103116  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 31215834 - 31215886
Alignment:
Q  178 ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagc 230  Q
    ||||||||||||||| |||||||||||||| | | ||||||||| ||||||||    
T  31215834 ttttccatatggagtcatgatggaaaaatgatgtttgaaaatataattgaagc 31215886  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 15676769 - 15676702
Alignment:
Q  184 atatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatgacaa 251  Q
    |||||||||| |||||| |||||||| ||||| || || |||||||||||| | || |||||||||||    
T  15676769 atatggagttttgatgggaaaatggtgtatgagaacataattgaagccacataagagtttgatgacaa 15676702  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 16172959 - 16173048
Alignment:
Q  167 ctcaagatattttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatgacaaatatc 256  Q
    ||||| || ||||| | ||||||| ||  |||||||||||||| || || || ||| | ||||||||| | |||||||||||||||||||    
T  16172959 ctcaaaatgtttttacaatatggaatttcgatggaaaaatggtctacgagaacatcttggaagccacacaagattttgatgacaaatatc 16173048  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 14522317 - 14522256
Alignment:
Q  184 atatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttga 245  Q
    |||||||| | ||||||||||||||| ||||| |||||||| ||||||||||| ||||||||    
T  14522317 atatggagctttgatggaaaaatggtgtatgagaatatcatcgaagccacagaagattttga 14522256  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 14504395 - 14504462
Alignment:
Q  178 ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttga 245  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||  | ||||||||||| || |||||    
T  14504395 ttttcaatatggagttttgatggaaaaatggtgtatgaaaatattgtagaagccacagaagagtttga 14504462  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 14468216 - 14468283
Alignment:
Q  178 ttttccatatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttga 245  Q
    ||||| |||||||||| |||||||||||| || |||||||| ||  ||||||||||||| || |||||    
T  14468216 ttttcaatatggagttttgatggaaaaattgtgtatgaaaacattgttgaagccacagaagagtttga 14468283  T

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Target: scaffold0289 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 5261 - 5194
Alignment:
Q  184 atatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatgacaa 251  Q
    |||||||||| |||||| |||||||| ||||| || || |||||||||||||| || |||||||||||    
T  5261 atatggagttttgatgggaaaatggtgtatgagaacattattgaagccacagaagagtttgatgacaa 5194  T

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Target: scaffold0289; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 14094 - 14027
Alignment:
Q  184 atatggagttatgatggaaaaatggtttatgaaaatatcattgaagccacagaggattttgatgacaa 251  Q
    |||||||||| |||||| |||||||| ||||| || || |||||||||||||| || |||||||||||    
T  14094 atatggagttttgatgggaaaatggtgtatgagaacattattgaagccacagaagagtttgatgacaa 14027  T

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