View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070R-Insertion-1 (Length: 945)
Name: NF3070R-Insertion-1
Description: NF3070R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070R-Insertion-1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 852; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 852; E-Value: 0
Query Start/End: Original strand, 8 - 915
Target Start/End: Complemental strand, 39264086 - 39263178
Alignment:
| Q |
8 |
agaggaagctctagactcattaatctcaaattcacactcagtaaatcagcagttccatgatgtaacacagaaccattagctaacaacaacaatgaattga |
107 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39264086 |
agaggaagctctagacccatcaatctcaaattcacactcagtaaatcagcagttccatgatgtaacacagaaccattagctaacaacaacaatgaattga |
39263987 |
T |
|
| Q |
108 |
acagcttcactattctgaaacctggttgatgaatacttagtattatagttcttcctctagtttcagccataaccttaagcatgtcaataatttgcaaagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39263986 |
acagcttcactattctgaaacctggttgatgaatacttagtattatagttcttcctctagtttcagccataaccttaagcatgtcaataatttgcaaagc |
39263887 |
T |
|
| Q |
208 |
tgaagtactatcaagccctgaagttggttcgtcaagaatcaaaacttttggatcatgtatgacttcaacaccaatagaaactcttcgcctttcaccgcct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39263886 |
tgaagtactatcaagccctgaagttggttcatcaagaatcaaaacttttggatcatgtatgacttcaacaccaatagaaactcttcgcctttcaccgcct |
39263787 |
T |
|
| Q |
308 |
gatatacctcggactcgatcatcaccaattctagtaccagcaacatgatcaagtccaagctctttaatcagtgacttgacccttgaacattgttgttgtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39263786 |
gatatacctcggactcgatcatcaccaattctagtaccagcaacatgatcaagtccaagctctttaatcagtgacttgacccttgaacattgttgttgtt |
39263687 |
T |
|
| Q |
408 |
gaggaagctttagccttagttttgcactgaacatcatggtttcttcaactgtaagtaagggaaacaaagtgtccttttgagtaacatatcctgatagctt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39263686 |
gaggaagctttagccttagttttgcactgaacatcatggtttcttcaactgtaagtaagggaaacaaagtgtccttttgagtaacatatcctgatagctt |
39263587 |
T |
|
| Q |
508 |
tctgaactgagatttgtctactggcttctggttcaacaacacagaccctttttggggtctgtgtttacctgctaggatctcaagaagtgatgattttcca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39263586 |
tctgaactgagatttgtctactggcttctggttcaacaacacagaccctttttgtggtctgtgtttacctgctaggatctcaagaagtgatgattttcca |
39263487 |
T |
|
| Q |
608 |
gctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattcttgagtacatgcctaactccactgcaacctttttcaactt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39263486 |
gctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattcttgagtacatgcctaactccactgcaacctttttcaactt |
39263387 |
T |
|
| Q |
708 |
cttctgtttcttgaccattagtatttactagttgtggagatttgctgaagattttaaaagggtgttctgctttgtttgtgtggattttgtagtttatgcc |
807 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39263386 |
cttctgtttcttgaacattagtatttactagttgtggagatttgctgaagattttaaaagggtgttctgctttgtttgtgtggattttgtagtttatgcc |
39263287 |
T |
|
| Q |
808 |
aatggcttcaacttcacagccctgcatcttcatttgttgcaaaggttgttgt-ttttgatttaaactcnnnnnnnctcactgattcctctactctcttct |
906 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
39263286 |
aatgacttcaacctcacagccctgcatcttcatttgttgcaaaggttgttgttttttgatttaaactctttttttctcactgattcctctactctcttct |
39263187 |
T |
|
| Q |
907 |
agttgtcaa |
915 |
Q |
| |
|
||||||||| |
|
|
| T |
39263186 |
agttgtcaa |
39263178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 8 - 689
Target Start/End: Complemental strand, 44067819 - 44067129
Alignment:
| Q |
8 |
agaggaagctctagactcattaatctcaaattcacactcagtaaatcagcagttccatgatgtaacacagaaccattagctaacaacaacaatgaattga |
107 |
Q |
| |
|
||||||||||||| || ||| || |||| ||||||| || ||||| ||||||||||||||||||||| ||||| | ||||||| | |||||| | |
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|
| T |
44067819 |
agaggaagctctaaacccatcaacctcagattcacatccaacaaatctgcagttccatgatgtaacacactgccattcaccaacaacagtattgaattca |
44067720 |
T |
|
| Q |
108 |
acagcttcactattctgaaacctggttgatgaatacttagtattatagttcttcctctagtttcagccataaccttaagcatgtcaataatttgcaaagc |
207 |
Q |
| |
|
||| ||||||||| | ||| || |||||||||||||||||||||||||||||||| |||| ||||||||| || || ||||| ||||| ||||||| ||| |
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|
| T |
44067719 |
acaacttcactatccggaacccgggttgatgaatacttagtattatagttcttcccctagattcagccatgactttcagcatatcaattatttgcagagc |
44067620 |
T |
|
| Q |
208 |
tgaagtactatcaagccctgaagttggttcgtcaagaatcaaaacttttggatcatgtatgacttcaacaccaatagaaactcttcgcctttcaccgcct |
307 |
Q |
| |
|
||| ||||| ||||| |||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||| ||||| || |
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|
| T |
44067619 |
tgaggtactgtcaagacctgaagttgcttcatcaagaatcaacacttttggatcatgtatgacttcaacaccaatggaaacacggcgcctctcaccaccg |
44067520 |
T |
|
| Q |
308 |
gatatacctcggactcgatcatcacca------attctagtaccagcaacatgatcaagtccaagctctttaatcagtgacttgacccttgaacattgtt |
401 |
Q |
| |
|
||||| || ||||| | ||||| ||| | |||||||| | ||||||| ||| |||||||||| ||||| |||||| ||| | | | | ||| |
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|
| T |
44067519 |
gatattccgcggaccctgtcatctccatctcctactctagtacttgaaacatgactaagaccaagctcttgaatcaatgacttaaccttacagcttagtt |
44067420 |
T |
|
| Q |
402 |
gttgttgaggaagctttagccttagttttgcactgaacatcatggtttcttcaactgtaagtaagggaaacaaagtgtccttttgagtaacatatcctga |
501 |
Q |
| |
|
|| | ||| ||| |||| | ||||||||||||| |||||||||||||||||||||||||||||||| || | ||||| ||||| |||||||| ||||| |
|
|
| T |
44067419 |
tttctggagaaagatttaactttagttttgcactaaacatcatggtttcttcaactgtaagtaaggggaaaagggtgtctttttgtgtaacataccctga |
44067320 |
T |
|
| Q |
502 |
tagctttctgaactgagatttgtctactggcttctggttcaacaacacaga---ccctttttggggtctgtgtttacctgctaggatctcaagaagtgat |
598 |
Q |
| |
|
| ||||||||||||||||| | ||| ||| |||||||| || | ||| || ||||| || || | |||| || || |||||||| | |||| |
|
|
| T |
44067319 |
aatttttctgaactgagatttatttacatgctcctggttcaccagaatagaaccaccattttgtggactaactctaccagcaagaatctcaagcaatgat |
44067220 |
T |
|
| Q |
599 |
gattttccagctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattcttgagtacatgcctaactccac |
689 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| | || | |||| |||||| |||||| ||||||||| |
|
|
| T |
44067219 |
gattttcctgctccacttggcccaacaattgcaagaatttcacatggcttggctatgcaattaacatccttgaggacatgcttaactccac |
44067129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 32413474 - 32413517
Alignment:
| Q |
272 |
tcaacaccaatagaaactcttcgcctttcaccgcctgatatacc |
315 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
32413474 |
tcaacaccaatggaaactctacgcctttccccgcctgatatacc |
32413517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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