View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070R-Insertion-2 (Length: 784)
Name: NF3070R-Insertion-2
Description: NF3070R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070R-Insertion-2 |
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| [»] chr8 (10 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 695; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 32 - 784
Target Start/End: Complemental strand, 480392 - 479647
Alignment:
| Q |
32 |
tattacatgttgatccaaaaccttaacgcatatatatgatatgtgttttgatattgaaataacatactatacctgcaaaatgagccaaattgaccaagca |
131 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480392 |
tattacatgttgatccaaaaccttaacgcatatatatgatatgtgttttgatattgaaataacatactatacctgcaaaatgagccaaattgaccaagca |
480293 |
T |
|
| Q |
132 |
acacagtttcctaaaagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccatgattgactttgaagttatgttctctgcattta |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480292 |
acacagtttcctaaaagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccatgattgactttgaagttatgttctctgcattta |
480193 |
T |
|
| Q |
232 |
ttagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatt |
331 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480192 |
ttagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatt |
480093 |
T |
|
| Q |
332 |
tactttctccattctgtaatataatagtattcaacttccaataattaaaaacacattcgtttaaattttgattgaataacaaattaattaatatgttcac |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
480092 |
tactttctccattctgtaatataatagtattcaacttccaataattaaaaacacattcgtttaaattttgattgaataacaaatta---aatattttcac |
479996 |
T |
|
| Q |
432 |
tttagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccct |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
479995 |
tttagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccct |
479896 |
T |
|
| Q |
532 |
caaaaaataaattttgattcaatgtaatgctgcaacatatatagagccatgataacacaaatcaatctcacgtacatgagtgtaaatatgcgtttatatt |
631 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
479895 |
caaaaaataaattttgattcaatgtaatgctgcaacatatatagagccatgataacacaaatcaatctcaggtacatgagtgtaaatatgcgtttatatt |
479796 |
T |
|
| Q |
632 |
attattactagagaaatgggaaactaacccaattagtgaggttaagaataacaaagaaaaactcccttaaaatttaaggaataasagccagaatttctcc |
731 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
479795 |
attattactagagaa--tggaaactaacccaattagtgaggttaagaataacaaagaaaaactcc--ttaaatttaaggaataagagccagaatttctcc |
479700 |
T |
|
| Q |
732 |
tatcaagaaacaaaagacatattatttttaattaatacacttaatattaatga |
784 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
479699 |
tatcaagaaacaaaagaaatattatttttaattaatacacttaatattaatga |
479647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 100 - 356
Target Start/End: Complemental strand, 467943 - 467687
Alignment:
| Q |
100 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca-ttactagagag--tcttgc |
196 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| | ||| | |||| | ||||||||||||||||||||||||||| || ||| || | | || |
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|
| T |
467943 |
atacctgcaaaatgagaaaaattccccaagcaacagtgcatccgagaagagacagacatccaagcaaccaattctcatcacttcctaataaggttgtggc |
467844 |
T |
|
| Q |
197 |
catgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcccc |
296 |
Q |
| |
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||||||||| |||||| ||| || |||||||||| |||| ||||||||||||||||||||||| || ||||||||||||| |||||| | ||||||| |
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| T |
467843 |
catgattgattttgaaagtatcttatctgcatttagtagt---tttggacccttcaacaatgcaattgacactgctccacttacacatataattgtcccc |
467747 |
T |
|
| Q |
297 |
actattttggctatagttctcatacttcgaatatttactttctccattctgtaatataat |
356 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
467746 |
actattttggctatagttcttatacttcgaatattcactttttccattctgtaatataat |
467687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 100 - 364
Target Start/End: Complemental strand, 474977 - 474712
Alignment:
| Q |
100 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatcattactagagagtcttgccat |
199 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| |||| |||||| | | |||||||||||||||| | |||||| ||| ||| | | ||||| |
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| T |
474977 |
atacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactatcatcactaccggaggttatggccat |
474878 |
T |
|
| Q |
200 |
gattgactttgaagtta---tgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcccc |
296 |
Q |
| |
|
||| || |||| || || |||| |||||||||| ||||||||||||||||||||||||| ||||| | |||||||| | |||||| | |||||| |
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| T |
474877 |
gatagattttgtaggtagtatgttttctgcattta---gtagctttggacccttcaacaatgctatagacaatgctccacaaacacatattaatgtccct |
474781 |
T |
|
| Q |
297 |
actattttggctatagttctcatacttcgaatatttactttctccattctgtaatata-atagtattca |
364 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| |||||||||| |
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|
| T |
474780 |
actattttggctatagttctcaaacttcgaatgttgactttctccattctgtaatatatatagtattca |
474712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 434 - 571
Target Start/End: Complemental strand, 467629 - 467492
Alignment:
| Q |
434 |
tagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctca |
533 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| |||| ||| ||||| ||||||||||||||||||| ||||| ||| ||| ||||||| |
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|
| T |
467629 |
tagtaattaccctactaaggctgcaattacaaatgtgactgccggaagaagattggaaatggcacttgcaactgaagaagaagaaagatatagaccctca |
467530 |
T |
|
| Q |
534 |
aaaaataaattttgattcaatgtaatgctgcaacatat |
571 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
467529 |
aaatataaattttgattcaatgtaatgctgcaatatat |
467492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 195 - 356
Target Start/End: Complemental strand, 446835 - 446677
Alignment:
| Q |
195 |
gccatgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcc |
294 |
Q |
| |
|
||||||||||| ||||||| ||| || |||||||||| ||| ||||||||||| |||||||| || || | |||||||| | |||||| | ||| | |
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|
| T |
446835 |
gccatgattgattttgaagatatattttctgcatttaaaagt---tttggaccctttaacaatgcgatggacattgctccacaaacacatattattgttc |
446739 |
T |
|
| Q |
295 |
ccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatataat |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
446738 |
ccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataat |
446677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 440 - 549
Target Start/End: Complemental strand, 446617 - 446508
Alignment:
| Q |
440 |
ttaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaat |
539 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| ||| ||| |||||||||||||| ||||||||||| |||| ||| |||||||||| || |
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|
| T |
446617 |
ttaccctgcaaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatat |
446518 |
T |
|
| Q |
540 |
aaattttgat |
549 |
Q |
| |
|
|||||||||| |
|
|
| T |
446517 |
aaattttgat |
446508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 454 - 571
Target Start/End: Complemental strand, 474637 - 474520
Alignment:
| Q |
454 |
ctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaataaattttgattcaa |
553 |
Q |
| |
|
||||||| |||||||||||||| |||| ||| |||| |||||||||||||| ||||| ||||| |||| ||| |||||||||| ||| ||||||| |||| |
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|
| T |
474637 |
ctgctataacaaatgtgactgcaggaataagattggtcatggcacttgcaattgaagaagaagatagatatagaccctcaaaatatagattttgagtcaa |
474538 |
T |
|
| Q |
554 |
tgtaatgctgcaacatat |
571 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
474537 |
tgtaacgctgcatcatat |
474520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 267 - 354
Target Start/End: Complemental strand, 455492 - 455405
Alignment:
| Q |
267 |
actgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatttactttctccattctgtaatata |
354 |
Q |
| |
|
||||||||| | | |||||||| |||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| |
|
|
| T |
455492 |
actgctccagtaacacatatcattgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgtaatata |
455405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 437 - 571
Target Start/End: Complemental strand, 455346 - 455212
Alignment:
| Q |
437 |
taattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaa |
536 |
Q |
| |
|
||||||||| ||||||| |||||| |||||||||||||||||| ||| ||| ||||||| ||||| ||||| ||| | |||| ||| |||||||||| |
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|
| T |
455346 |
taattacccaacaaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagttgaagaagatgatagatatagaccctcaaaa |
455247 |
T |
|
| Q |
537 |
aataaattttgattcaatgtaatgctgcaacatat |
571 |
Q |
| |
|
|||||||||||| || |||||||||||| |||| |
|
|
| T |
455246 |
tataaattttgatataaagtaatgctgcaaaatat |
455212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 737
Target Start/End: Complemental strand, 466828 - 466743
Alignment:
| Q |
650 |
ggaaactaacccaattagtgaggttaagaataacaaagaaaaactcccttaaaatttaaggaataasagccagaatttctcctatcaa |
737 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| | ||| |||||||||| | ||||| |||||||| ||||||| |||||||| |||| |
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|
| T |
466828 |
ggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactcc--ttaaattcaaggaatatgagccagagtttctcctgtcaa |
466743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 100 - 350
Target Start/End: Original strand, 27491400 - 27491647
Alignment:
| Q |
100 |
atacctgcaaaatgagccaaattgaccaagcaacacagtttcctaaaagacaaagacatccaagcaaccaattctcatca-ttactagagagtcttgcca |
198 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||||| |||| |||||| | ||||||||||||||||||||||||| || ||| || || ||||| |
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|
| T |
27491400 |
atacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatcacttccta-ag-gttgtgcca |
27491497 |
T |
|
| Q |
199 |
-tgattgactttgaagttatgttctctgcatttattagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtcccca |
297 |
Q |
| |
|
||||||| |||||||||||| | |||||||||| | ||||||||||||||||| | |||||| | ||||||||||||| || ||| | ||| || | |
|
|
| T |
27491498 |
atgattgattttgaagttatgctttctgcattta---gcagctttggacccttcaatagtgcaatgaacactgctccacttacacctataattgttccta |
27491594 |
T |
|
| Q |
298 |
ctattttggctatagttctcatacttcgaatatttactttctccattctgtaa |
350 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |
|
|
| T |
27491595 |
ttattttggctatagttctcaaacttctaatattcacttgctccattctgtaa |
27491647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 433 - 568
Target Start/End: Original strand, 27491737 - 27491872
Alignment:
| Q |
433 |
ttagtaattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctc |
532 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||| ||||||||||| || ||| |||| ||||||| |||||||| ||| ||||| ||| |||| |
|
|
| T |
27491737 |
ttagtagttaccctacgaaagctgctattacaaatgtcactgctggaactagattgcacattgcacttgtaactgaagaagagactagatataaacccca |
27491836 |
T |
|
| Q |
533 |
aaaaaataaattttgattcaatgtaatgctgcaaca |
568 |
Q |
| |
|
| | | ||||||||||| ||| |||||||||||||| |
|
|
| T |
27491837 |
agatagtaaattttgatccaaggtaatgctgcaaca |
27491872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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