View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070R-Insertion-3 (Length: 562)
Name: NF3070R-Insertion-3
Description: NF3070R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070R-Insertion-3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 282 - 562
Target Start/End: Complemental strand, 45392807 - 45392527
Alignment:
| Q |
282 |
ctcagaggttcagaacacatccaaaagaagtaagctataatgttatatttctaacttcgtgaatgcttgtgatttgacttgttaactcaactcataatgt |
381 |
Q |
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| T |
45392807 |
ctcagaggttcagaacacatccaaaagaattaagctatactgttatatttctaacttcgtgaatgcttgtgatttgatttgttaactcaactcataatgt |
45392708 |
T |
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| Q |
382 |
tatgattttacatatcaagcattattaaagatttcctaatatataaaatggataacaatctagcatatagnnnnnnnncagattaaatttctgttagcct |
481 |
Q |
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| T |
45392707 |
tatgattttacatatcaagcattattaaagatttcctattatataaaatggataacaatctagcatatagttttttttcagattaaatttctgttagcct |
45392608 |
T |
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| Q |
482 |
ctttgtattagaggttttgttagtaatggtatgatacatattgatcttagttgtctgtctgtcgcacattaattgttgatg |
562 |
Q |
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| T |
45392607 |
ctttgtattagaggttttgttagtaatggtatgatacatattgatcttagttgtctgtctgtcgcacattaattgttgatg |
45392527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 45393002 - 45392820
Alignment:
| Q |
26 |
atctctaataatgcatgaacttcatttatagatatgttgttttaagttttgactctactctaaaaatggaagcttgatgttcagccagcctttttgcatg |
125 |
Q |
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| T |
45393002 |
atctctaataatgcatgaacttcattcatagatatgttgttttaagttttgactctactctaaaaatggaagcttgatgttcagccagcctttttgcatg |
45392903 |
T |
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| Q |
126 |
ttttagctgaagcttgatggttaatatatannnnnnnnnaatttactggcattgatttgatgtactgctcacatgtctgcagta |
209 |
Q |
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| T |
45392902 |
ttttagctgaagcttgatggttaatat-tttttttttttaatttactggcattgatttgatgtactgctcacatgtctgcagta |
45392820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 343 - 451
Target Start/End: Complemental strand, 52739455 - 52739347
Alignment:
| Q |
343 |
aatgcttgtgatttgacttgttaactcaactcataatgttatgattttacatatcaagcattattaaagatttcctaatatataaaatggataacaatct |
442 |
Q |
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| T |
52739455 |
aatgcttgtgatttggtttgttaactcaactcataatgttatgattttacctatcaagcattcttaaagatttcctaacatataaaatggataacaatct |
52739356 |
T |
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| Q |
443 |
agcatatag |
451 |
Q |
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| T |
52739355 |
agcatatag |
52739347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 52739588 - 52739482
Alignment:
| Q |
24 |
ttatctctaataatgcatgaacttcatttatagatatgttgttttaagttttgactctactctaaaaatggaagcttgatgttcagccagcctttttgca |
123 |
Q |
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| T |
52739588 |
ttatctctaataatgcatgaactttattcttagatatgttgtttta-------actcta--cttataatggaagcttggtgttcagccagcc-ttttgca |
52739499 |
T |
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| Q |
124 |
tgttttagctgaagctt |
140 |
Q |
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| T |
52739498 |
tgttttcgctgatgctt |
52739482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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