View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3070R-Insertion-4 (Length: 445)

Name: NF3070R-Insertion-4
Description: NF3070R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3070R-Insertion-4
NF3070R-Insertion-4
[»] chr1 (7 HSPs)
chr1 (11-445)||(50059207-50059639)
chr1 (44-158)||(49061372-49061485)
chr1 (41-158)||(49053792-49053908)
chr1 (80-152)||(52282052-52282126)
chr1 (77-159)||(17458408-17458490)
chr1 (77-160)||(42263467-42263550)
chr1 (83-140)||(12634501-12634558)
[»] chr3 (7 HSPs)
chr3 (77-198)||(40574351-40574471)
chr3 (44-158)||(33709828-33709941)
chr3 (35-199)||(31362238-31362401)
chr3 (44-158)||(52653772-52653885)
chr3 (295-383)||(50914672-50914760)
chr3 (78-152)||(16729783-16729857)
chr3 (219-400)||(52653522-52653703)
[»] chr4 (6 HSPs)
chr4 (65-159)||(20251407-20251501)
chr4 (75-158)||(24391833-24391915)
chr4 (82-159)||(47078078-47078155)
chr4 (32-152)||(48779852-48779972)
chr4 (79-160)||(27538132-27538213)
chr4 (88-160)||(24129391-24129463)
[»] chr5 (6 HSPs)
chr5 (219-382)||(36202882-36203045)
chr5 (65-140)||(9080677-9080752)
chr5 (95-158)||(29006483-29006546)
chr5 (95-160)||(9851498-9851563)
chr5 (87-160)||(15205361-15205434)
chr5 (203-311)||(29006309-29006418)
[»] chr2 (3 HSPs)
chr2 (65-160)||(14218911-14219006)
chr2 (65-148)||(34681128-34681211)
chr2 (43-152)||(38327393-38327501)
[»] chr8 (6 HSPs)
chr8 (58-154)||(28696104-28696200)
chr8 (92-158)||(12729389-12729455)
chr8 (265-402)||(12729137-12729274)
chr8 (84-142)||(10085847-10085905)
chr8 (29-150)||(44729085-44729204)
chr8 (79-160)||(14546317-14546398)
[»] chr7 (3 HSPs)
chr7 (77-160)||(24870414-24870497)
chr7 (79-160)||(20463991-20464072)
chr7 (79-146)||(1840661-1840728)
[»] chr6 (3 HSPs)
chr6 (86-160)||(11931951-11932025)
chr6 (44-158)||(28612150-28612264)
chr6 (84-140)||(28072858-28072914)
[»] scaffold0007 (1 HSPs)
scaffold0007 (78-148)||(217757-217827)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 50059639 - 50059207
Alignment:
Q  11 aacatattagcaattcattttaggatattttgaaatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagtt 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50059639 aacatattaacaattcattttaggatattttgaaatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagtt 50059540  T
Q  111 ctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtattannnnnnnacagaattttgattcacaagaatgtgttttttgtatctatctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  50059539 ctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtattatttttt-acagaattttgattcacaagaatgtgttttttgtatctatctt 50059441  T
Q  211 tgtttggttccaaagtgtctttatttatagaaaaccttgtgtcttttagtgaccagaaaccactttttaaaagagcttgtttacgaatggttacattgct 310  Q
    ||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  50059440 tgtttggtttcaaagtgtctttatttatagaaaatcttatgtcttttagtgaacagaaac-actttttaaaagagcttgtttacgaatggttacattgct 50059342  T
Q  311 ttgatcttcaagcattacacctcttctctataatgtctctatttaacgactgcaattttttaaatatattttggaaaattttcacacaaatagtagatag 410  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50059341 ttgatgttcaagcattacacctcttcactataatgtctctatttaacgactgcaattttttaaatatattttggaaaattttcacacaaatagtagatag 50059242  T
Q  411 tagatgttagtatatagttcaacatggccacatgg 445  Q
    |||||||||||||||||||||||||||||||||||    
T  50059241 tagatgttagtatatagttcaacatggccacatgg 50059207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 49061485 - 49061372
Alignment:
Q  44 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 143  Q
    |||||| ||||||| ||  | ||||||| | ||| |||||| ||||| ||||||| ||||||||||| ||| |||||| |||||||||||||||||| ||    
T  49061485 aatccttgacgtgatttgcacattcacaccaaacatatcga-caatggtagtttacagaataaagttttgtcaatttccctcgtgcactagagaaaagaa 49061387  T
Q  144 agaatgattcagtat 158  Q
    ||||||||| |||||    
T  49061386 agaatgatttagtat 49061372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 49053908 - 49053792
Alignment:
Q  41 tgaaatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaa 140  Q
    ||||||||| ||||||||||  | ||||||| | | | |||||| ||||| ||||||| | ||||||||||||  |||||| |||||||||||||||| |    
T  49053908 tgaaatccttgacgtgacttgcacattcacaccaagcatatcga-caatggtagtttacaaaataaagttctgccaatttccctcgtgcactagagaaga 49053810  T
Q  141 taaagaatgattcagtat 158  Q
     ||||||||||| |||||    
T  49053809 gaaagaatgatttagtat 49053792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 52282052 - 52282126
Alignment:
Q  80 atcgatcaatgatagtttatagaataaagttctgtaaatt--tctctcgtgcactagagaaaataaagaatgatt 152  Q
    ||||||||||| ||||||| ||||||||||| ||| ||||  |||||| |||||||||||||| |||||||||||    
T  52282052 atcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaagaaagaatgatt 52282126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 17458490 - 17458408
Alignment:
Q  77 cgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatt 159  Q
    |||||||||||||||||||||| | ||||||||| | |  |||  ||||||||||||||||||  ||||||||||| ||||||    
T  17458490 cgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtatt 17458408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 42263467 - 42263550
Alignment:
Q  77 cgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    |||||||| ||||| || |||| | || |||||| |||  |||||||||||||||||||||||| ||||||||||  |||||||    
T  42263467 cgtatcgaacaatgttaatttacaaaacaaagttttgtcgatttctctcgtgcactagagaaaagaaagaatgatatagtatta 42263550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 12634558 - 12634501
Alignment:
Q  83 gatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaa 140  Q
    |||||||| || |||| ||||||||||||||| |||||||||  ||||||| ||||||    
T  12634558 gatcaatggtaatttacagaataaagttctgtcaatttctctaatgcactaaagaaaa 12634501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 40574351 - 40574471
Alignment:
Q  77 cgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtattannnnnnnacagaattt 176  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||        ||||||||    
T  40574351 cgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactagagaaaagaaagaatgatttaatattattttcgg-cagaattt 40574449  T
Q  177 tgattcacaagaatgtgttttt 198  Q
    ||| ||||||||||||| ||||    
T  40574450 tgactcacaagaatgtgatttt 40574471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 33709941 - 33709828
Alignment:
Q  44 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 143  Q
    |||||| ||||||||||  | ||||||| | | |||||||| ||||| ||||||| ||||||||||||||| || |||||| ||||||||||||||| ||    
T  33709941 aatccttgacgtgacttgcacattcacaccaagcgtatcga-caatggtagtttacagaataaagttctgtcaaattctctggtgcactagagaaaagaa 33709843  T
Q  144 agaatgattcagtat 158  Q
    ||||||||| |||||    
T  33709842 agaatgatttagtat 33709828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 31362238 - 31362401
Alignment:
Q  35 atattttgaaatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactag 134  Q
    ||||| ||||||||| ||||  ||||||| ||||||| | |||||||||||| ||  ||||||| | ||||||||||||| |||||  |||||||||||     
T  31362238 atattgtgaaatccttgacggaacttatacattcacaccaaacgtatcgatcgatagtagtttacaaaataaagttctgtcaattttcctcgtgcactaa 31362337  T
Q  135 agaaaataaagaatgattcagtattannnnnnnacagaattttgattcacaagaatgtgtttttt 199  Q
    | |||||||| ||  ||| |||||||       |||||||||||| ||||||||||||| |||||    
T  31362338 aaaaaataaaaaaaaatttagtatta-ttttcgacagaattttgactcacaagaatgtgattttt 31362401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 52653885 - 52653772
Alignment:
Q  44 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 143  Q
    |||||| ||||||||||  | ||||||||| |  ||||||| ||||| ||||||| ||||||||||||||| |||||  ||||||||||||||||||  |    
T  52653885 aatccttgacgtgacttgcacattcacatcaagtgtatcga-caatggtagtttacagaataaagttctgtcaattttcctcgtgcactagagaaaagta 52653787  T
Q  144 agaatgattcagtat 158  Q
    ||||||||| |||||    
T  52653786 agaatgatttagtat 52653772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 383
Target Start/End: Original strand, 50914672 - 50914760
Alignment:
Q  295 gaatggttacattgctttgatcttcaagcattacacctcttctctataatgtctctatttaacgactgcaattttttaaatatattttg 383  Q
    |||||||| ||||||||  ||  ||||||||||||||| | ||||| || ||||||||||||| | ||||| |||| ||||||||||||    
T  50914672 gaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttg 50914760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 16729857 - 16729783
Alignment:
Q  78 gtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgatt 152  Q
    ||||||||||||||||||||| | ||||||||| ||| |||||   |||||||||| | |||| |||||||||||    
T  16729857 gtatcgatcaatgatagtttacaaaataaagttatgtcaattttcttcgtgcactaaataaaagaaagaatgatt 16729783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 400
Target Start/End: Complemental strand, 52653703 - 52653522
Alignment:
Q  219 tccaaagtgtctttatttatagaaaaccttgtgtcttttagtgaccagaaaccactttttaaaagagcttgtttacgaatggttacattgctttgatctt 318  Q
    |||||||||||||| | |||||| || |||||||| ||| ||||  ||| || ||  |||||||||| ||||| | ||||||||||||||| |  ||  |    
T  52653703 tccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgcatcaattgt 52653604  T
Q  319 caagcattacacctcttctctataatgtctctatttaacgactgcaattttttaaatatattttggaaaattttcacacaaa 400  Q
    ||| || ||||||| ||| ||| || || | |||||||  | ||||| |||  |||||||||||||||| || || ||||||    
T  52653603 caaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatattttggaaatttctctcacaaa 52653522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 20251501 - 20251407
Alignment:
Q  65 attcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatt 159  Q
    ||||||||| |  ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||| ||| ||||||| ||||||    
T  20251501 attcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgtgcactacagaaaagaaataatgatttagtatt 20251407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 24391915 - 24391833
Alignment:
Q  75 aacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtat 158  Q
    |||||||||| ||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||| |||||    
T  24391915 aacgtatcga-caatgatagtttacagaataaagttatgtcaatttctctcatgcactagagaaaagaaagaatgatttagtat 24391833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 47078078 - 47078155
Alignment:
Q  82 cgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatt 159  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||| ||||| | |||| ||||||||||| ||||||    
T  47078078 cgatcaatgttagtttacagaataaagttctgtcaatttctctcgtacactacaaaaaagaaagaatgatttagtatt 47078155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 48779852 - 48779972
Alignment:
Q  32 aggatattttgaaatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcac 131  Q
    |||||| | ||||||| | ||||||||||  | ||||||| | | | |||| ||||||||||||||| ||||||||||| ||| | ||| | ||||||||    
T  48779852 aggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatcaatcaatgatagtttagagaataaagttatgtcagtttatgtcgtgcac 48779951  T
Q  132 tagagaaaataaagaatgatt 152  Q
    |||||||||||| ||||||||    
T  48779952 tagagaaaataatgaatgatt 48779972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 27538132 - 27538213
Alignment:
Q  79 tatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    |||||||||||||  ||||| ||||| ||||| ||| |||||||||  |||| |||||||| |||||||||||| |||||||    
T  27538132 tatcgatcaatgaccgtttacagaattaagttatgtcaatttctcttatgcattagagaaattaaagaatgatttagtatta 27538213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 24129391 - 24129463
Alignment:
Q  88 atgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    ||||||||||| | ||||||||| ||| |||||||  |||||||||||||||| |||||| |||| |||||||    
T  24129391 atgatagtttacataataaagttatgtcaatttcttccgtgcactagagaaaagaaagaaagatttagtatta 24129463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 382
Target Start/End: Complemental strand, 36203045 - 36202882
Alignment:
Q  219 tccaaagtgtctttatttatagaaaaccttgtgtcttttagtgaccagaaaccactttttaaaagagcttgtttacgaatggttacattgctttgatctt 318  Q
    |||||||||||| |||||||||| || ||| |||| ||| ||||  |||||  ||  |||||||||| ||||| | |||||||||||||| ||  ||  |    
T  36203045 tccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatggttacattgattcaattgt 36202946  T
Q  319 caagcattacacctcttctctataatgtctctatttaacgactgcaattttttaaatatatttt 382  Q
    |||||||||||||| ||||||| || |||||| |||||| | ||||| |||| |||||||||||    
T  36202945 caagcattacaccttttctctaaaaggtctctttttaaccattgcaacttttcaaatatatttt 36202882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 9080677 - 9080752
Alignment:
Q  65 attcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaa 140  Q
    ||||||||  ||||||| |||||||| ||||||| | ||||||||||| | |||| |||||||| |||||||||||    
T  9080677 attcacattaaacgtatagatcaatggtagtttacaaaataaagttctctcaattgctctcgtgtactagagaaaa 9080752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 29006546 - 29006483
Alignment:
Q  95 tttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtat 158  Q
    |||| ||||||||||||||| || || |||||||||||||| |||| || |||||||| |||||    
T  29006546 tttacagaataaagttctgtcaacttatctcgtgcactagaaaaaagaatgaatgatttagtat 29006483  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 9851498 - 9851563
Alignment:
Q  95 tttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    |||| ||||||||||| ||| |  |||||| ||||||||||||||| ||||| ||||| |||||||    
T  9851498 tttacagaataaagttttgtcacattctcttgtgcactagagaaaagaaagactgatttagtatta 9851563  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 15205434 - 15205361
Alignment:
Q  87 aatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    |||||||||||| ||||||||||  ||| ||||||||| || ||||| |||||| | | ||||||| |||||||    
T  15205434 aatgatagtttagagaataaagtcatgttaatttctcttgttcactaaagaaaagatacaatgatttagtatta 15205361  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 29006418 - 29006309
Alignment:
Q  203 tctatctttgtt-tggttccaaagtgtctttatttatagaaaaccttgtgtcttttagtgaccagaaaccactttttaaaagagcttgtttacgaatggt 301  Q
    |||||||||||| || ||| ||||||||| |||||||||| || ||| |||| ||| ||||   ||||| ||  |||||||||  ||||| | |||||||    
T  29006418 tctatctttgttctgcttctaaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggt 29006319  T
Q  302 tacattgctt 311  Q
    ||||||||||    
T  29006318 tacattgctt 29006309  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 14218911 - 14219006
Alignment:
Q  65 attcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    ||||||| | |||||||| ||||||||||||||| | ||||||||||| | |||||  |||||||||||||||||| ||||||||||| |||||||    
T  14218911 attcacaccaaacgtatccatcaatgatagtttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtatta 14219006  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 34681128 - 34681211
Alignment:
Q  65 attcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaat 148  Q
    ||||||||| | ||||||||||||||||||||||   ||||||||| ||| |||||||||||| ||| |||||||| |||||||    
T  34681128 attcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcaccagagaaaagaaagaat 34681211  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 38327393 - 38327501
Alignment:
Q  43 aaatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaata 142  Q
    ||||||| ||||||||||| | ||||||| | |||| ||||||||||| || |||| | ||||||||| ||  |||||||||| |||| |||||||| ||    
T  38327393 aaatccttgacgtgacttacacattcacaccaaacgcatcgatcaatggtaatttacataataaagttttggcaatttctctc-tgcagtagagaaagta 38327491  T
Q  143 aagaatgatt 152  Q
     |||||||||    
T  38327492 tagaatgatt 38327501  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 28696104 - 28696200
Alignment:
Q  58 cttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattca 154  Q
    |||||| ||||||| | | ||||| ||||||||||| |||||||||||||||||||| |||||  ||||||| || ||||||| |||||||||||||    
T  28696104 cttatacattcacaccaagcgtattgatcaatgataatttatagaataaagttctgtcaattttcctcgtgccctggagaaaagaaagaatgattca 28696200  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 12729455 - 12729389
Alignment:
Q  92 tagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtat 158  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |||||    
T  12729455 tagtttactgaataaagttctgtcaatttctctcgtgcactagagaaaagaaagaattatttagtat 12729389  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 402
Target Start/End: Complemental strand, 12729274 - 12729137
Alignment:
Q  265 agaaaccactttttaaaagagcttgtttacgaatggttacattgctttgatcttcaagcattacacctcttctctataatgtctctatttaacgactgca 364  Q
    |||||| ||| |||| ||||| ||| | | ||||||||| |||||||  ||  || |||||||||||| ||||||| || ||||||||||||| | ||||    
T  12729274 agaaacaactctttagaagagtttgctcatgaatggttatattgcttcaattgtcgagcattacaccttttctctaaaaggtctctatttaaccattgca 12729175  T
Q  365 attttttaaatatattttggaaaattttcacacaaata 402  Q
    | |||  |||||||||||||||| || || ||||||||    
T  12729174 actttccaaatatattttggaaatttctctcacaaata 12729137  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 10085847 - 10085905
Alignment:
Q  84 atcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaata 142  Q
    ||||||||||||||||||||||||||||| |   || ||||| ||||||||||||||||    
T  10085847 atcaatgatagtttatagaataaagttctcttgtttactctcttgcactagagaaaata 10085905  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 44729204 - 44729085
Alignment:
Q  29 tttaggatattttgaaatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtg 128  Q
    |||||||||  ||| |||||| ||||||||||  | ||||| | | | |||||||||||||||||||||| |||||  |||  ||| ||| |||||||||    
T  44729204 tttaggatacattggaatccttgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttacagaatgtagt--tgtcaatctctctcgtg 44729107  T
Q  129 cactagagaaaataaagaatga 150  Q
    |||||| ||||  |||||||||    
T  44729106 cactagggaaatgaaagaatga 44729085  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 14546317 - 14546398
Alignment:
Q  79 tatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    |||||||||||| || |||| | | ||||||| ||| |||||||||  | || ||||||||| ||||||||||| |||||||    
T  14546317 tatcgatcaatggtactttacatactaaagttatgtcaatttctctgattcattagagaaaagaaagaatgatttagtatta 14546398  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 24870497 - 24870414
Alignment:
Q  77 cgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    ||||| |||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||||| ||||| | ||| |||||||    
T  24870497 cgtattgatcaatgatagtttacataataaagttctatcaatttttctcgtgcactagagaaaagaaagacttatttagtatta 24870414  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 20464072 - 20463991
Alignment:
Q  79 tatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    |||||||||||||| |||| || |||||| |||||| |||||||||||| || ||||| || |||| ||||||| |||||||    
T  20464072 tatcgatcaatgattgtttgtaaaataaatttctgtcaatttctctcgtacattagagtaagtaaataatgatttagtatta 20463991  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 1840728 - 1840661
Alignment:
Q  79 tatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaaga 146  Q
    |||||||||||||||||||| | ||||||| ||||| |||||||||| |||| | ||||||| |||||    
T  1840728 tatcgatcaatgatagtttacataataaagatctgtcaatttctctcatgcatttgagaaaagaaaga 1840661  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 11932025 - 11931951
Alignment:
Q  86 caatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaatgattcagtatta 160  Q
    ||||| |||||||||||||||| |||||| || ||||||||||||||||| |||| ||||||||||  |||||||    
T  11932025 caatggtagtttatagaataaaattctgtcaaattctctcgtgcactagataaaagaaagaatgatatagtatta 11931951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 28612150 - 28612264
Alignment:
Q  44 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 143  Q
    |||||| |||||||||| || ||||||| | | | ||||| |||||| |||| || | || || ||||||| |||| | ||||||||||||||| || ||    
T  28612150 aatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcactagagataagaa 28612249  T
Q  144 agaatgattcagtat 158  Q
    ||||||||| |||||    
T  28612250 agaatgatttagtat 28612264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 28072914 - 28072858
Alignment:
Q  84 atcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaa 140  Q
    |||||||||| |||||||||||| ||||| | |||| | |||||| |||||||||||    
T  28072914 atcaatgatattttatagaataatgttctctcaattacactcgtgtactagagaaaa 28072858  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 217827 - 217757
Alignment:
Q  78 gtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataaagaat 148  Q
    ||||||||||||| ||||||| | ||||| ||||||  ||||||||||||| ||||||||||| |||||||    
T  217827 gtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaaagaat 217757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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