View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3070R-Insertion-5 (Length: 420)

Name: NF3070R-Insertion-5
Description: NF3070R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3070R-Insertion-5
NF3070R-Insertion-5
[»] chr5 (7 HSPs)
chr5 (90-413)||(16087847-16088170)
chr5 (227-416)||(16085061-16085250)
chr5 (286-416)||(3627797-3627923)
chr5 (359-416)||(3640918-3640975)
chr5 (260-336)||(14837106-14837181)
chr5 (243-307)||(3627780-3627845)
chr5 (370-412)||(14837182-14837224)
[»] chr1 (3 HSPs)
chr1 (226-416)||(19033617-19033807)
chr1 (283-416)||(38968527-38968659)
chr1 (376-416)||(28830745-28830785)
[»] chr4 (4 HSPs)
chr4 (211-416)||(14059025-14059231)
chr4 (225-416)||(23544662-23544850)
chr4 (315-416)||(22462407-22462508)
chr4 (118-162)||(26947369-26947413)
[»] chr2 (4 HSPs)
chr2 (211-416)||(7504925-7505131)
chr2 (219-416)||(26973292-26973490)
chr2 (227-416)||(26968772-26968962)
chr2 (316-410)||(17364670-17364761)
[»] chr8 (4 HSPs)
chr8 (211-356)||(5659718-5659863)
chr8 (211-416)||(38643595-38643789)
chr8 (227-416)||(8263462-8263647)
chr8 (242-357)||(21419002-21419118)
[»] chr3 (5 HSPs)
chr3 (211-416)||(53731143-53731345)
chr3 (227-416)||(53726677-53726863)
chr3 (328-418)||(42872030-42872120)
chr3 (105-162)||(14658272-14658329)
chr3 (118-162)||(14655015-14655059)
[»] chr6 (1 HSPs)
chr6 (260-416)||(19229541-19229694)
[»] chr7 (1 HSPs)
chr7 (312-416)||(47204907-47205011)
[»] scaffold0427 (2 HSPs)
scaffold0427 (283-416)||(5775-5906)
scaffold0427 (211-307)||(5856-5944)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 90 - 413
Target Start/End: Original strand, 16087847 - 16088170
Alignment:
Q  90 ttatctttgcttaatattgttgtataagttggctgctgacatagttctatcaacatcctccaccaatatttcatgggacaccttgtagaagaaggtcttt 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16087847 ttatctttgcttaatattgttgtataagttggctgctgacatagttctatcaacatcctccaccaatatttcatgggacaccttgtagaagaaggtcttt 16087946  T
Q  190 accttgcggttacagttacacggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaaccg 289  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  16087947 aacttgcggttacagttacagggataaattccaagattgttgtacctgatgcgtaaacagtaaccgcaacaccgcaacttcaaataataaccggcaaccg 16088046  T
Q  290 catcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttag 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16088047 catcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttag 16088146  T
Q  390 tattaacctgaggcgtcacgaaga 413  Q
    |||||||||  || ||||||||||    
T  16088147 tattaacctagggtgtcacgaaga 16088170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 227 - 416
Target Start/End: Original strand, 16085061 - 16085250
Alignment:
Q  227 tgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgag 326  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  16085061 tgttgtacctgatgcgtaaacagtaaccgcaacaccacaacttcaaataataatcggcaaccgcatcttcaaataacaacgcagccaccgcaatttcgag 16085160  T
Q  327 taacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  16085161 taacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaacattgaacacgttagtattaacctcaggcgtcacgaagactg 16085250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 286 - 416
Target Start/End: Original strand, 3627797 - 3627923
Alignment:
Q  286 accgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacg 385  Q
    |||||| ||| |||||| |||| ||| ||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||| |||||    ||||    
T  3627797 accgcaactttaaataataacgtagcaaccgcaacttcaaataacaacgaaccaaattctgcaaaacaaactagaaagtaaacctgtaaaat----cacg 3627892  T
Q  386 ttagtattaacctgaggcgtcacgaagactg 416  Q
    ||||||||||| |||||||||| ||| ||||    
T  3627893 ttagtattaacttgaggcgtcaggaatactg 3627923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 3640975 - 3640918
Alignment:
Q  359 gaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  3640975 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactg 3640918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 14837106 - 14837181
Alignment:
Q  260 accgcaacttcaaataataaccggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaa 336  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| ||| |||  ||||||||| ||||||||||    
T  14837106 accgcaactt-aaataataaccggcaaccgcaacttcaaataacaactcagtcactacaacttcgaataacaacaaa 14837181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 3627780 - 3627845
Alignment:
Q  243 taaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacg 307  Q
    ||||| ||||||||||||||||||||| ||||||||||   ||||||||| |||||||||||||||    
T  3627780 taaacagtaaccgcaacaccgcaactttaaataataacgtagcaaccgcaacttcaaataacaacg 3627845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 412
Target Start/End: Original strand, 14837182 - 14837224
Alignment:
Q  370 tgcaaaattgaacacgttagtattaacctgaggcgtcacgaag 412  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  14837182 tgcaaaattgaacacgttagtattaacctgaggcatcatgaag 14837224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 226 - 416
Target Start/End: Original strand, 19033617 - 19033807
Alignment:
Q  226 ttgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaaccgcatcttcaaataacaacgcagccaccgcaacttcga 325  Q
    |||||||||||||||||||||| |||||||||||||  |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  19033617 ttgttgtacctgatgcgtaaacagtaaccgcaacacgacaactttaaataatatccggcaaccgcaacttcaaataacaacgcagccaccgcaacttcga 19033716  T
Q  326 gtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19033717 gtaacaacgaaccagattctgcaaaacaaactagacagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 19033807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 283 - 416
Target Start/End: Complemental strand, 38968659 - 38968527
Alignment:
Q  283 gcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaac 382  Q
    ||||| ||| ||||||||||| ||  ||| ||||||||||| | ||||||| |||| |||||||||| |  ||||||||||||||||||| |||||||||    
T  38968659 gcaacagcaacttcaaataactacaaagcaaccgcaacttcaaataacaacgaaccggattctgcaagattaactagaaagtaaacctgc-aaattgaac 38968561  T
Q  383 acgttagtattaacctgaggcgtcacgaagactg 416  Q
    | ||||||||||||||||||||||||||||||||    
T  38968560 atgttagtattaacctgaggcgtcacgaagactg 38968527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Original strand, 28830745 - 28830785
Alignment:
Q  376 attgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
    ||||||||||||||||||||||| |||||||| || |||||    
T  28830745 attgaacacgttagtattaacctaaggcgtcatgaggactg 28830785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 211 - 416
Target Start/End: Complemental strand, 14059231 - 14059025
Alignment:
Q  211 ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgca 309  Q
    |||||||||||||||||||||||||||||| |||||| | |||| |||||||||||||| || ||||||| | ||||||||| |||| ||||||| ||||    
T  14059231 ggataaattccaagattgttgtacctgatgtgtaaacagcaaccacaacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataacatcgca 14059132  T
Q  310 gccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacg 409  Q
    | || ||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  14059131 gtcatcgcaacttcaaataacaacgaaccagattctgcaaaacaaactacaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtcacg 14059032  T
Q  410 aagactg 416  Q
    |||||||    
T  14059031 aagactg 14059025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 225 - 416
Target Start/End: Complemental strand, 23544850 - 23544662
Alignment:
Q  225 attgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttc 323  Q
    |||||||||||| ||| ||||||   ||||||||||||||||||| |  ||||||| | ||||||||| |||| || |||| | |||||||| |||||||    
T  23544850 attgttgtaccttatgtgtaaacatcaaccgcaacaccgcaactttaggtaataacgcagcaaccgcaacttcgaacaacaccccagccaccacaacttc 23544751  T
Q  324 gagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
     | ||||| | |||| |||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||||||||||||||||    
T  23544750 aaataacaccgaacctgattctgcaaaacaaactagaaagtaaacctgtaaaat----cacgttagtattaacctgaggcgtcacgaagactg 23544662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 22462508 - 22462407
Alignment:
Q  315 cgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagac 414  Q
    ||||||||| | ||||||  ||||||||||| ||| || ||| ||||||||||| || ||||||||| |||||||||||||| ||||||||||||| |||    
T  22462508 cgcaacttcaaataacaatgaaccagattctacaagacgaaccagaaagtaaacttgtaaaattgaatacgttagtattaacatgaggcgtcacgaggac 22462409  T
Q  415 tg 416  Q
    ||    
T  22462408 tg 22462407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 26947369 - 26947413
Alignment:
Q  118 ttggctgctgacatagttctatcaacatcctccaccaatatttca 162  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  26947369 ttggttgctgacatagttctatcaacatcctccaccaatacttca 26947413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 211 - 416
Target Start/End: Original strand, 7504925 - 7505131
Alignment:
Q  211 ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgca 309  Q
    |||||||||| ||||||||||||||||||| |||||| | ||||  ||||||||||||| || ||||||| | ||||||||| |||| ||||||| ||||    
T  7504925 ggataaattctaagattgttgtacctgatgtgtaaacagcaaccataacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataacaccgca 7505024  T
Q  310 gccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacg 409  Q
    |||||||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  7505025 gccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggtgtcacg 7505124  T
Q  410 aagactg 416  Q
    |||||||    
T  7505125 aagactg 7505131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 219 - 416
Target Start/End: Original strand, 26973292 - 26973490
Alignment:
Q  219 tccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgc 317  Q
    ||||||||| |||||||||||| |||||| | ||||||||||||||||||| || ||||||| | ||||||||| |||| ||||||| ||||||||||||    
T  26973292 tccaagattcttgtacctgatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataacaccgcagccaccgc 26973391  T
Q  318 aacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
    |||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  26973392 aacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtcacaaagactg 26973490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 227 - 416
Target Start/End: Original strand, 26968772 - 26968962
Alignment:
Q  227 tgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcga 325  Q
    |||||||||||||| |||||| | ||||||||||||||||||| || ||| ||  | ||||||||| |||  |||||||  |||||||||| |||||| |    
T  26968772 tgttgtacctgatgagtaaacagcaaccgcaacaccgcaactttaagtaacaatgcagcaaccgcaactttgaataacacagcagccaccggaacttcaa 26968871  T
Q  326 gtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
     ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  26968872 ataacaccgaaccatattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgtgttagtattaacctgaggcgtcacgaagactg 26968962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 410
Target Start/End: Original strand, 17364670 - 17364761
Alignment:
Q  316 gcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacga 410  Q
    |||||||| | ||||||| ||||||||||||||   | ||||||||||||||| |||||||||| | ||||| ||||||| |||| || ||||||    
T  17364670 gcaacttcaaataacaacgaaccagattctgca---cgaactagaaagtaaacttgcaaaattggaaacgttggtattaaactgaagcatcacga 17364761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 211 - 356
Target Start/End: Complemental strand, 5659863 - 5659718
Alignment:
Q  211 ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaaccgcatcttcaaataacaacgcag 310  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||    
T  5659863 ggataaattccaagattgttgtacctgatgcgtaaacagcaaccgcaacaccgcaacttcaaataataacaggcaaccgcaacttcaaataacaacgtag 5659764  T
Q  311 ccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaac 356  Q
    ||||| |||||||||  |||||| |||||| |||||||||||||||    
T  5659763 ccaccccaacttcgaaaaacaacgaaccagtttctgcaaaacaaac 5659718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 211 - 416
Target Start/End: Original strand, 38643595 - 38643789
Alignment:
Q  211 ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgca 309  Q
    ||||||||||||||||||||||||   |||||||||| | ||||||||||||||||||| || ||||||| | ||||||||| |||| |||||||         
T  38643595 ggataaattccaagattgttgtac---atgcgtaaaccgcaaccgcaacaccgcaactttaagtaataacgcagcaaccgcaacttcgaataaca----- 38643686  T
Q  310 gccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacg 409  Q
        |||||||||| | ||||| | |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38643687 ----ccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtcacg 38643782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 227 - 416
Target Start/End: Complemental strand, 8263647 - 8263462
Alignment:
Q  227 tgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcga 325  Q
    |||||||||||||| ||||||   |||||||||| |||||||| || ||||||| | ||||||||| |||| ||||| | ||| | |||||||||||| |    
T  8263647 tgttgtacctgatgtgtaaacaacaaccgcaacatcgcaactttaagtaataacgcagcaaccgcaacttcgaataa-accgcggtcaccgcaacttcaa 8263549  T
Q  326 gtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
     ||||| | |||||||||||||||||||||||||||||||||| || |||||    |||||||||||||||||||||||||||||||||||    
T  8263548 ataacaccgaaccagattctgcaaaacaaactagaaagtaaacatgtaaaat----cacgttagtattaacctgaggcgtcacgaagactg 8263462  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 21419002 - 21419118
Alignment:
Q  242 gtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccag 340  Q
    |||||| | |||||||||||| |||||| |||||||||| |  ||| | || |||| ||||||||||||||| |||||||||| | ||||||| ||||||    
T  21419002 gtaaacagcaaccgcaacaccacaactttaaataataacgcaacaatcacaacttccaataacaacgcagccgccgcaacttcaaataacaacgaaccag 21419101  T
Q  341 attctgcaaaacaaact 357  Q
    |||| ||||||||||||    
T  21419102 attccgcaaaacaaact 21419118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 211 - 416
Target Start/End: Original strand, 53731143 - 53731345
Alignment:
Q  211 ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgca 309  Q
    |||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||| || ||||||| | ||||||||| |||  || |||| ||||    
T  53731143 ggataaattccaagattgttgtaccttatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacacagcaaccgcaactttgaagaacaccgca 53731242  T
Q  310 gccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacg 409  Q
    |||||||||||||| | |||||   |||| |||||||||||||||||||||||| ||||||| |||||    ||||||||||||||||||||||||||||    
T  53731243 gccaccgcaacttcaaataacacggaacctgattctgcaaaacaaactagaaaggaaacctgtaaaat----cacgttagtattaacctgaggcgtcacg 53731338  T
Q  410 aagactg 416  Q
    |||||||    
T  53731339 aagactg 53731345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 227 - 416
Target Start/End: Original strand, 53726677 - 53726863
Alignment:
Q  227 tgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcga 325  Q
    |||||||||| ||| |||||| | ||||||||||||||||||| || ||||||| | ||||||||| |||  || |||| |||| ||||||||||||| |    
T  53726677 tgttgtaccttatgtgtaaacagcaaccgcaacaccgcaactttaagtaataacacagcaaccgcaactttgaagaacaccgcaaccaccgcaacttcaa 53726776  T
Q  326 gtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
     |||||   |||| ||||||||||||||||||||||| |||||||| ||||||    ||||||||||||||||||||||||||||||||||    
T  53726777 ataacacggaacctgattctgcaaaacaaactagaaattaaacctgtaaaatt----acgttagtattaacctgaggcgtcacgaagactg 53726863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 418
Target Start/End: Complemental strand, 42872120 - 42872030
Alignment:
Q  328 aacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactgcc 418  Q
    |||||||||||||||||| | | | ||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  42872120 aacaacaaaccagattctacgagataaattagaaagtaaacctgtaaaattgaatacgttagtattaacctgaggcgtcacgaagactgcc 42872030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 14658329 - 14658272
Alignment:
Q  105 attgttgtataagttggctgctgacatagttctatcaacatcctccaccaatatttca 162  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  14658329 attgctgtgtaatttggctgctgacatagttctatcaacatcctccaccaatacttca 14658272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 14655059 - 14655015
Alignment:
Q  118 ttggctgctgacatagttctatcaacatcctccaccaatatttca 162  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  14655059 ttggctgctgacatagttctatcaacatcctccaccaatacttca 14655015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 260 - 416
Target Start/End: Original strand, 19229541 - 19229694
Alignment:
Q  260 accgcaacttcaaataataac-cggcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaacta 358  Q
    |||||||||| || ||||||| | ||||||||| |||| || ||||  ||||||||||||||||| | ||||| | ||||||||||||||||||||||||    
T  19229541 accgcaactttaagtaataacgcagcaaccgcaacttcgaagaacactgcagccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaacta 19229640  T
Q  359 gaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaagactg 416  Q
    ||||||||||||| |||||    |||||||||||||||||||||||||||||||||||    
T  19229641 gaaagtaaacctgtaaaat----cacgttagtattaacctgaggcgtcacgaagactg 19229694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 312 - 416
Target Start/End: Complemental strand, 47205011 - 47204907
Alignment:
Q  312 caccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtcacgaa 411  Q
    |||||||||||| | ||||| | || |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  47205011 caccgcaacttcaaataacatcgaatcagattctgcaaaacaaactagaaagtaaatctgcaaaattgaatacgttagtattaacctgaggcgtcacgaa 47204912  T
Q  412 gactg 416  Q
    |||||    
T  47204911 gactg 47204907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 416
Target Start/End: Complemental strand, 5906 - 5775
Alignment:
Q  283 gcaaccgcatcttcaaataacaacgcagccaccgcaacttcgagtaacaacaaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaac 382  Q
    ||||||||| |||||||||| ||| | || ||||||||||| | ||||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||     
T  5906 gcaaccgcaacttcaaataataac-cggcaaccgcaacttcaaataacaacgaactagattctgcaaaacaaactagaaattaaacctgcaaaatt-aaa 5809  T
Q  383 acgttagtattaacctgaggcgtcacgaagactg 416  Q
      | ||| ||||||||||||||||||||||||||    
T  5808 tggatagcattaacctgaggcgtcacgaagactg 5775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 5944 - 5856
Alignment:
Q  211 ggataaattccaagattgttgtacctgatgcgtaaacggtaaccgcaacaccgcaacttcaaataataaccggcaaccgcatcttcaaataacaacg 307  Q
    |||||||||||||||||||||||||| ||| |||||| | |||||||||        |||||||||||||||||||||||| |||||||||||||||    
T  5944 ggataaattccaagattgttgtacctaatgtgtaaacagcaaccgcaac--------ttcaaataataaccggcaaccgcaacttcaaataacaacg 5856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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