View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070R-Insertion-6 (Length: 300)
Name: NF3070R-Insertion-6
Description: NF3070R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070R-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0430 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 17049515 - 17049806
Alignment:
| Q |
9 |
taagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaacca |
108 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| |
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| T |
17049515 |
taaggcactggacaaaacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacagcacaaaataaataatcaaggacaagacaagtaacca |
17049614 |
T |
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| Q |
109 |
cttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17049615 |
cttttttgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctgt |
17049714 |
T |
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| Q |
209 |
ctcacttcttcacaacactgttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttc |
300 |
Q |
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| T |
17049715 |
ctcacttcttcacaaaactgttcacatccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttc |
17049806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 732 - 441
Alignment:
| Q |
9 |
taagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaacca |
108 |
Q |
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||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
732 |
taagggagtggataggacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacagcacaaaataaataatcaaggatgggacaagtaacca |
633 |
T |
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| Q |
109 |
cttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctat |
208 |
Q |
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| T |
632 |
cttttttgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgttgt |
533 |
T |
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| Q |
209 |
ctcacttcttcacaacactgttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttc |
300 |
Q |
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| T |
532 |
ctgacttcttcacaaaactgttcacgtctttcctgctaaattgactgcggcagcttctctatttgtcaggtaacaatttcgatgcttttttc |
441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 48532359 - 48532650
Alignment:
| Q |
9 |
taagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaacca |
108 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||||| |
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| T |
48532359 |
taagggactggacaggacaaaaatatttgcaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataatcaaggactc-acaagtaacca |
48532457 |
T |
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| Q |
109 |
cttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctat |
208 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48532458 |
cttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctat |
48532557 |
T |
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| Q |
209 |
ctcacttcttcacaacactgttcacgtccttcctgctaaatt-gactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttc |
300 |
Q |
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| T |
48532558 |
ctcacttcttcacaacattgttcacgtccttcctgctaacttagactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttc |
48532650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 39377132 - 39376876
Alignment:
| Q |
29 |
aaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccacttta |
128 |
Q |
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|||||||||||||||||||||||| |||| | | ||| || | |||||||||||||| ||||||| ||| ||||| || |||||||||||||||||||| |
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| T |
39377132 |
aaatatttgtaccgcgtttgatttgttaataa-agaaaggacaacacaaaataaataaccaaggactggataagtagccgcttttttgtccaccacttta |
39377034 |
T |
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| Q |
129 |
gttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacactg |
228 |
Q |
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|||||||||||||||| ||| || ||||||||| ||||| ||||||||||||||| ||| || |||||||| || ||||||| ||| || |||| |
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| T |
39377033 |
gttggggacaacttttaatccagcagattactaaattaaaaatacgtttttatcctttagataatatgttttctcacttcctcactttgtcataatactg |
39376934 |
T |
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| Q |
229 |
ttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaattt |
287 |
Q |
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||||||| | | |||| ||||||||| |||||| ||| ||||||||||||| |||| |
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| T |
39376933 |
ttcacgttgtacttgctcaattgactggggctgcacctc-gtttgtcaggtaaccattt |
39376876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 39534100 - 39534272
Alignment:
| Q |
8 |
ataagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaacc |
107 |
Q |
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|||||||| ||||| |||||| |||||||| |||||||||||| || ||| |||||||| ||||||||||||||| ||| ||| ||||||||| || |
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| T |
39534100 |
ataagggattggaccgaacaaaagtatttgtaacgcgtttgatttgtttaaaa-aaaaatgacggcacaaaataaataaccaaagacgggacaagtagcc |
39534198 |
T |
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| Q |
108 |
acttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttat |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||||| |
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| T |
39534199 |
gcttttttgtccaccactttagttggggacaactttttgtccaacgaattactaaattaaaaatacgtttttat |
39534272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 33305518 - 33305566
Alignment:
| Q |
8 |
ataagggactggacatgacaaaaatatttgtaccgcgtttgatttatta |
56 |
Q |
| |
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|||| ||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
33305518 |
ataaaggattggacatgacaaaaatatttgtactacgtttgatttatta |
33305566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 16437232 - 16437097
Alignment:
| Q |
8 |
ataagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaacc |
107 |
Q |
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| T |
16437232 |
ataagggactggacaggacaaaaatatctgtactgcctttgatttataaaaacaaaaaaggacagcacaaaagaagtaa-----gacaggacaactatcc |
16437138 |
T |
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| Q |
108 |
acttttttgtccaccactttagttggggacaactttttgtcc |
149 |
Q |
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| T |
16437137 |
gcttttttgttca-tgcattagttggggacaactttttgtcc |
16437097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 6625055 - 6625087
Alignment:
| Q |
8 |
ataagggactggacatgacaaaaatatttgtac |
40 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
6625055 |
ataagggactggacaggacaaaaatatttgtac |
6625087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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