View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3070R-Insertion-8 (Length: 88)
Name: NF3070R-Insertion-8
Description: NF3070R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070R-Insertion-8 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 76; Significance: 9e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 9e-36
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 50766224 - 50766303
Alignment:
| Q |
9 |
catcgaataaatatattttacaaaaaattgaataatatgtctctttaatggataagaacccgtatattttccttcctttg |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
50766224 |
catcgaataaatatattttacaaaaaattgaataatatgtctctttaatggataagaacccatatattttccttcctttg |
50766303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 29996707 - 29996636
Alignment:
| Q |
17 |
aaatatattttacaaaaaattgaataatatgtctctttaatggataagaacccgtatattttccttcctttg |
88 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||| | |||| |||||| |||| | ||||| ||||||| |||| |
|
|
| T |
29996707 |
aaatatatattataaaaaattgaataatttgtatatttattggatatgaactcatatatcttccttcatttg |
29996636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University