View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_high_15 (Length: 317)
Name: NF3070_high_15
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 39075620 - 39075903
Alignment:
| Q |
11 |
cacagaactgcatagtgaatcaaaaggaacttggaacttgaaagacatgaaaaaaggaaactaacatatatttctgctataggggacaaaaataattgag |
110 |
Q |
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| T |
39075620 |
cacagaactgcatagtgaatcaaaaggaacttggaa-------gacatgaaaaaaggaaactaacatatatttctgctataggggacaaaaataattgag |
39075712 |
T |
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| Q |
111 |
taaatcaaaactgccctagatggattatgtttgtcttgaaatggtttagcaagaacatgaatgaaatatctgttgttactttatattggacctataaact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39075713 |
taaatcaaaactgccctagatggattatgtttgtcttgaagtggtttagcaagaatatgaatgaaatatctattgttactttatattggacctataaact |
39075812 |
T |
|
| Q |
211 |
atgctttttctaccctgcaaatatacaataagaatcaaaacaaaatccagcacaaagccatgtattaattgagcaaagtatatcacgaaat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39075813 |
atgctttttctaccctgcaaatatacaataagaatcaaaacaaaatccagcacaaagccatgtattaattgagtaaagtatatcacgaaat |
39075903 |
T |
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