View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_high_17 (Length: 305)
Name: NF3070_high_17
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_high_17 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 300
Target Start/End: Original strand, 17049521 - 17049817
Alignment:
| Q |
4 |
actggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccacttttt |
103 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17049521 |
actggacaaaacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacagcacaaaataaataatcaaggacaagacaagtaaccacttttt |
17049620 |
T |
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| Q |
104 |
tgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctatctcact |
203 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17049621 |
tgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctgtctcact |
17049720 |
T |
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| Q |
204 |
tcttcacaacactgttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttcttcatctcact |
300 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17049721 |
tcttcacaaaactgttcacatccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttcttcgtctcact |
17049817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 717 - 430
Alignment:
| Q |
13 |
gacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccacca |
112 |
Q |
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| T |
717 |
gacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacagcacaaaataaataatcaaggatgggacaagtaaccacttttttgtccacca |
618 |
T |
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| Q |
113 |
ctttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaa |
212 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
617 |
ctttagttggggacaactttttgtccagcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgttgtctgacttcttcacaa |
518 |
T |
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| Q |
213 |
cactgttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttcttcatctcact |
300 |
Q |
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| T |
517 |
aactgttcacgtctttcctgctaaattgactgcggcagcttctctatttgtcaggtaacaatttcgatgcttttttcttcgtctcact |
430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 48532362 - 48532661
Alignment:
| Q |
1 |
gggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccactt |
100 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||| |
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| T |
48532362 |
gggactggacaggacaaaaatatttgcaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaataatcaaggactc-acaagtaaccactt |
48532460 |
T |
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| Q |
101 |
ttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctatctc |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48532461 |
ttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctatctc |
48532560 |
T |
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| Q |
201 |
acttcttcacaacactgttcacgtccttcctgctaaatt-gactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttcttcatctcac |
299 |
Q |
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| T |
48532561 |
acttcttcacaacattgttcacgtccttcctgctaacttagactgcggctgcttctctatttgtcaggtaacaatttcgatgcttttttcttcgtctcac |
48532660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 39377132 - 39376876
Alignment:
| Q |
18 |
aaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccacttta |
117 |
Q |
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|||||||||||||||||||||||| |||| | | ||| || | |||||||||||||| ||||||| ||| ||||| || |||||||||||||||||||| |
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| T |
39377132 |
aaatatttgtaccgcgtttgatttgttaataa-agaaaggacaacacaaaataaataaccaaggactggataagtagccgcttttttgtccaccacttta |
39377034 |
T |
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| Q |
118 |
gttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacactg |
217 |
Q |
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| T |
39377033 |
gttggggacaacttttaatccagcagattactaaattaaaaatacgtttttatcctttagataatatgttttctcacttcctcactttgtcataatactg |
39376934 |
T |
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| Q |
218 |
ttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaattt |
276 |
Q |
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||||||| | | |||| ||||||||| |||||| ||| ||||||||||||| |||| |
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| T |
39376933 |
ttcacgttgtacttgctcaattgactggggctgcacctc-gtttgtcaggtaaccattt |
39376876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 39534117 - 39534272
Alignment:
| Q |
14 |
acaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccac |
113 |
Q |
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| T |
39534117 |
acaaaagtatttgtaacgcgtttgatttgtttaaaa-aaaaatgacggcacaaaataaataaccaaagacgggacaagtagccgcttttttgtccaccac |
39534215 |
T |
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| Q |
114 |
tttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttat |
170 |
Q |
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||||||||||||||||||||||||| || |||||||| ||||| |||||||||| |
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| T |
39534216 |
tttagttggggacaactttttgtccaacgaattactaaattaaaaatacgtttttat |
39534272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 33305527 - 33305566
Alignment:
| Q |
6 |
tggacatgacaaaaatatttgtaccgcgtttgatttatta |
45 |
Q |
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| T |
33305527 |
tggacatgacaaaaatatttgtactacgtttgatttatta |
33305566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 16437228 - 16437097
Alignment:
| Q |
1 |
gggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccactt |
100 |
Q |
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||||||||||| ||||||||||| ||||| || |||||||||| ||||| ||||| || ||||||||| || ||| |||||||||| || || ||| |
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| T |
16437228 |
gggactggacaggacaaaaatatctgtactgcctttgatttataaaaacaaaaaaggacagcacaaaagaagtaa-----gacaggacaactatccgctt |
16437134 |
T |
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| Q |
101 |
ttttgtccaccactttagttggggacaactttttgtcc |
138 |
Q |
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|||||| || | |||||||||||||||||||||||| |
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| T |
16437133 |
ttttgttca-tgcattagttggggacaactttttgtcc |
16437097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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