View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_high_23 (Length: 257)
Name: NF3070_high_23
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 2621821 - 2622065
Alignment:
| Q |
8 |
ggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggcgcaattcaacctgtgttttcatttggattggggtcg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2621821 |
ggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgcaattcaacctgtgttttcatttggattggggtcg |
2621920 |
T |
|
| Q |
108 |
gttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621921 |
gttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttg |
2622020 |
T |
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| Q |
208 |
ttaatgtgcttcaacattatagctttgcttacatgggagagtact |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2622021 |
ttaatgtgcttcaacattatagctttgcttacatgggagagtact |
2622065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 2590266 - 2590510
Alignment:
| Q |
8 |
ggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggcgcaattcaacctgtgttttcatttggattggggtcg |
107 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||| | || |||||||||||||||| ||| ||||||||||||||| |
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| T |
2590266 |
ggcaatgaatggaccagagtggaagcaaacatgtttgggttgtataaatgcggttttatttggtgcaattcaacctgtgtattcttttggattggggtcg |
2590365 |
T |
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| Q |
108 |
gttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2590366 |
gttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttg |
2590465 |
T |
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| Q |
208 |
ttaatgtgcttcaacattatagctttgcttacatgggagagtact |
252 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
2590466 |
ttaatgtacttcaacattatagctttgcttacatgggagaatact |
2590510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 2642824 - 2642580
Alignment:
| Q |
8 |
ggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggcgcaattcaacctgtgttttcatttggattggggtcg |
107 |
Q |
| |
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||||||||||| ||||||||||||||| |||| ||||| |||||||||||| ||||| |||| || |||| |||||| | ||| || | | ||||||| |
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| T |
2642824 |
ggcaatgaatgtgccagagtggaagcaagcatgtttgggttgtataaatgcggttttattcggtgcgattcgacctgtatattcgttcgcaatggggtca |
2642725 |
T |
|
| Q |
108 |
gttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttg |
207 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2642724 |
gttatatcagtttattttttggaagaccatgatgagatcaagaggcaaattaggatctatgcattttgttttctagggttggctgttatctcaatggttg |
2642625 |
T |
|
| Q |
208 |
ttaatgtgcttcaacattatagctttgcttacatgggagagtact |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2642624 |
ttaatgtgcttcaacattatagctttgcttacatgggagaatact |
2642580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 27 - 252
Target Start/End: Complemental strand, 2674642 - 2674417
Alignment:
| Q |
27 |
tggaagcaaacatgcttgggctgtataaatgcgattttagtcggcgcaattcaacctgtgttttcatttggattggggtcggttatatcggtttattttt |
126 |
Q |
| |
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||||||||| |||| ||||| ||||||||||| ||||| |||| |||||||||||||| | ||| |||| ||||||||||||| |||| ||||||||| |
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| T |
2674642 |
tggaagcaagcatgtttgggttgtataaatgcagttttattcggtgcaattcaacctgtatattcgtttgcattggggtcggttgtatcagtttattttc |
2674543 |
T |
|
| Q |
127 |
tggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacatta |
226 |
Q |
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||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
2674542 |
tggaggaccatgatgagattaagaagcaaattaggatctatgtgttttgttttctagggttggctgttatctcattggttgttaatgtacttcaacatta |
2674443 |
T |
|
| Q |
227 |
tagctttgcttacatgggagagtact |
252 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
2674442 |
tagctttgcttacatgggagagtact |
2674417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 2571169 - 2570931
Alignment:
| Q |
12 |
atgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggcgcaattcaacctgtgttttcatttggattggggtcggtta |
111 |
Q |
| |
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|||||||| ||||||||||||||| |||| ||||| ||| | |||||| ||||| |||| || ||||||||||||| ||| |||| | |||||||||||| |
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| T |
2571169 |
atgaatgggccagagtggaagcaagcatgtttgggttgttttaatgcggttttattcggtgcgattcaacctgtgtattcgtttgcaatggggtcggtta |
2571070 |
T |
|
| Q |
112 |
tatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaa |
211 |
Q |
| |
|
|||| ||||||||| | ||| |||| |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||| |
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| T |
2571069 |
tatcagtttattttattgaggaccacgatgagatcaagaaacaaattaggatttatggtttttgttttctagggctggctgttatttcaatggttattaa |
2570970 |
T |
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| Q |
212 |
tgtgcttcaacattatagctttgcttacatgggagagta |
250 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |
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| T |
2570969 |
tatgcttcaacattatagctttgcttacatgggagagta |
2570931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 252
Target Start/End: Original strand, 2449689 - 2449856
Alignment:
| Q |
85 |
tgttttcatttggattggggtcggttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagg |
184 |
Q |
| |
|
|||||||||||| | ||||||| ||| || ||||||||| | | ||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
2449689 |
tgttttcatttgcaatggggtcaactatttctgtttattttcttaacaaccatgatgagatcaagaagcagattaggatttatatgctttgttttctagg |
2449788 |
T |
|
| Q |
185 |
gttggctgttat-ctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagagtact |
252 |
Q |
| |
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||| || |||| |||||||||| ||||||||||||| |||||| | ||||| |||||||||||||||| |
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| T |
2449789 |
gttagc-cttatcctcaatggtttttaatgtgcttcagcattattgttttgcatacatgggagagtact |
2449856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 252
Target Start/End: Original strand, 2436514 - 2436653
Alignment:
| Q |
113 |
atcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaat |
212 |
Q |
| |
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||||||||||||| || | ||| ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||| | ||| || ||| | ||| |
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| T |
2436514 |
atcggtttattttctgaatgaccgtgatgagatgaagaagcagattaggatgtatgctttttgttttctagggttggctttggcctctattgttttcaat |
2436613 |
T |
|
| Q |
213 |
gtgcttcaacattatagctttgcttacatgggagagtact |
252 |
Q |
| |
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||||| |||| |||||||||||||||||||||||||||| |
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| T |
2436614 |
atgcttgaacagtatagctttgcttacatgggagagtact |
2436653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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