View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_high_27 (Length: 241)
Name: NF3070_high_27
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 49476288 - 49476503
Alignment:
| Q |
10 |
cctccaaaatcaaatttagacctaatctttgtcagcttcttgtttaggagagcttctcaattaaaacaaaaa-ttacgaaaaaggtcgctataagcttgt |
108 |
Q |
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| T |
49476288 |
cctccaaaatcaaatttagacctaatctttgtcagcttcttgtttaggagagcttctcaattaaaacaaaaaattacgaaaaaggtcgctataagcttgt |
49476387 |
T |
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| Q |
109 |
aa-gtgttaattgagaggtaatttcaacttatatgcaaagctgttctttaatattgctcatttcaaaagtgattgttaataagttaatctaaatttgaag |
207 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49476388 |
aaagtgttaattgagaggtaatttcaacttatatgcaaagccgttctttaatattgctcatttcaaaagtgattgttaataagttaatctaaatttgaag |
49476487 |
T |
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| Q |
208 |
gccgctttgtctccat |
223 |
Q |
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|| ||||||||||||| |
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| T |
49476488 |
gctgctttgtctccat |
49476503 |
T |
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