View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_high_28 (Length: 240)
Name: NF3070_high_28
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_high_28 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 10233967 - 10233777
Alignment:
| Q |
50 |
tggagttgttcagaacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataagttttagttacactttagtt |
149 |
Q |
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| T |
10233967 |
tggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagttacactttagtt |
10233868 |
T |
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| Q |
150 |
atcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatatt |
240 |
Q |
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| T |
10233867 |
atcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattctttgtgatatt |
10233777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 50 - 240
Target Start/End: Complemental strand, 8336851 - 8336661
Alignment:
| Q |
50 |
tggagttgttcagaacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataagttttagttacactttagtt |
149 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8336851 |
tggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagttacactttagtt |
8336752 |
T |
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| Q |
150 |
atcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336751 |
atcatattgcaatacttattaccttataattttttccttacagttttcaaccaacttaaattcctttcgtgttatgattcttagtgatatt |
8336661 |
T |
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