View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_high_3 (Length: 556)
Name: NF3070_high_3
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 16 - 549
Target Start/End: Complemental strand, 13795273 - 13794740
Alignment:
| Q |
16 |
caattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcatctatacatgcactatgagctgcatcaatcatgatataatactcgagtaa |
115 |
Q |
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| T |
13795273 |
caattaaaatatgagaattagtttcactgtagaaagaagatcgtgcatcagctatacatgcactatgagctgcatcaatcatgatataatactcgagtaa |
13795174 |
T |
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| Q |
116 |
attcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgct |
215 |
Q |
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| T |
13795173 |
attcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgatagttgatggcacaaacaagatgct |
13795074 |
T |
|
| Q |
216 |
ggagagatctttcatttcttactgactcatgataactcatcatgcttgaatgcaataatacccgatatttttacgcacagtgtgatctgaatcaatggga |
315 |
Q |
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| T |
13795073 |
ggagagatctttcatttcttactgactcatgataactcgtcatgcttgaatgcgataatacccgatatttttacgcacagtgtgatctgaatcaatggga |
13794974 |
T |
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| Q |
316 |
tcaacgagtttatttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataatatttagtaaac |
415 |
Q |
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| T |
13794973 |
tcaacgagtttacttgaagtcaaaagaacatttcttagcaatcctcgtaatctttttcaataaatgaatcatctacaattttaaataataattagtaaac |
13794874 |
T |
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| Q |
416 |
aaaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctct |
515 |
Q |
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| T |
13794873 |
aaaacatatttacatttcgtttccggtggtgacaagtgaaaaacatgtctaactttcctttttgttaaccctaacttttttcaacaagttgagtttctct |
13794774 |
T |
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| Q |
516 |
caatcttgttttattttcaaaattacctttgcta |
549 |
Q |
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| T |
13794773 |
caatcttgttttattttcaaaattacctttgcta |
13794740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 16025332 - 16025445
Alignment:
| Q |
92 |
aatcatgatataatactcgagtaaattcaaggagagaaaacatcacatagaagtgaagatctaatttgtaacataatatcttaataattcgacaactgat |
191 |
Q |
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||||||| ||||| ||| |||| || || |||||||||||||||||||||||||||| ||||| ||||||||| || ||| | |||||| ||||||| |
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| T |
16025332 |
aatcatgttataacacttgagtgaagtctaggagagaaaacatcacatagaagtgaaaatctagtttgtaacacgatgtctctagaattcgtcaactgac |
16025431 |
T |
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| Q |
192 |
agttgatggcacaa |
205 |
Q |
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| T |
16025432 |
agttgatggcacaa |
16025445 |
T |
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Back To:
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