View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_high_5 (Length: 421)
Name: NF3070_high_5
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 1079135 - 1078743
Alignment:
| Q |
18 |
gttgggacttcaatcactatgttcattgctttaacctaaagaagttacttccagctttgtgaagttgctcaatgaatttagcgtgcatttaattataccg |
117 |
Q |
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| T |
1079135 |
gttgggacttcaatcactatgttcattgctttaacctaaagaagttacttccagctttgtgaagttgctcaatgaatttagcgtgtatttaattataccg |
1079036 |
T |
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| Q |
118 |
cggcgaaaattgattttggttgaaaatgagtaatttacattttgatacatttacaaaagtggttttatcaatttatatttagatagtttgaatcacaatt |
217 |
Q |
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| T |
1079035 |
cggcgaaaattgattttggttgaaaatgagtaatttacattttgatacatttacaaaagtggttttatcaatttatgtttagatagtttgaatcacaatt |
1078936 |
T |
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| Q |
218 |
ggttttataatatataattgccacttttagaatgtgtttggatccacattaagtccattattctcgcttccaaagcattctcaccatgatttttgctaaa |
317 |
Q |
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| T |
1078935 |
ggttttataatatatgattaccacttatagtatgtgtttgaatccacattaagtccattattctcgcttccaaagcattctcaccatgatttttgctaaa |
1078836 |
T |
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| Q |
318 |
tccaaacacacacctcataagctagaaattttacattttaagtagaattgcttttccaaccagaatgagccaatcactataaatttgtgttca |
410 |
Q |
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| T |
1078835 |
tccaaacacacacctcataagctagaaattttacattttaagtagaattgcttttccaactagaatgagccaatcactataaatttgtgttca |
1078743 |
T |
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