View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_high_8 (Length: 390)
Name: NF3070_high_8
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 16 - 383
Target Start/End: Original strand, 37335208 - 37335575
Alignment:
| Q |
16 |
caagcaaaacgccattgctttccatttgtttcacaagcctctgtgcctcatttaatggcaactgaacttgactagtgaccatatgaatatatgcaaatct |
115 |
Q |
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| T |
37335208 |
caagcaaaacgccattgctttccatttgtttcacaagcctctgtgcctcatttaatggcaactgaacttgactagtgaccatatgaatatatgcaaatct |
37335307 |
T |
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| Q |
116 |
tgattgaacccttgcagctgagaaaggctcaacatattgagtagcaataagggtgcttccatagtacagataaatgatcactgagctgaaatccacatgc |
215 |
Q |
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| T |
37335308 |
tgattgaacccttgcagctgagaaaggctcaacatattgagtagcaataagggtgcttccatagtacagataaatgatcactgagctgaaatccacatgc |
37335407 |
T |
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| Q |
216 |
acttttttgtttggatttgtgaagtttgtcagcatagttaaatcagcattgagtagataaccaacatcaaggtatgcagcatttagggtgacactagaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37335408 |
acttttttgtttggatttgtgaagtttgtcagcatagttaaatcagcattgagtagataaccaacatcaaggtatgcagcatttagggtgacactagaca |
37335507 |
T |
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| Q |
316 |
catcaaaatgtggaatttgtggacgaaaaaccaagtacactatgaggactattatgcctcctatgata |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37335508 |
catcaaaatgtggaatttgtggacgaaaaaccaagtacactatgaggactattatgcctcctatgata |
37335575 |
T |
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