View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_11 (Length: 360)
Name: NF3070_low_11
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 33746950 - 33746610
Alignment:
| Q |
19 |
cgaacctcccaagccaacaccaaatgggatatcttgaatctaatttctttttccattgttatactgtagtttccttgatgtcctgcagtgttacatacaa |
118 |
Q |
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| T |
33746950 |
cgaacctcccaaaccaaccccaaatgggatatcttgaatctaatttctttttccattgttatactgtagtttccttgatgtcctgcagtgttacatacaa |
33746851 |
T |
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| Q |
119 |
aatgcaacatggttatctgtatcgattttcttatttacaacttcagtatcagaaagttgcacatagtataatcttattgatannnnnnnggtgttttgca |
218 |
Q |
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| T |
33746850 |
aatgcaacatggttatttgtatcgattttcttatttacaacttcagtgtcagaaagttgcacatagtataatcttattgata-ttttttggtgttttgca |
33746752 |
T |
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| Q |
219 |
gaacaatattccagtttattgtccaggattaaccgatggctcattgggtgacatgttgtactttcattccttccacaacactggaggtcctgacaaccct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
33746751 |
gaacaatattccagtttattgtccaggattaaccgatggctcattgggtgacatgttgtcctttcattccttccacaacactggcggtcctgacaaccct |
33746652 |
T |
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| Q |
319 |
ggtcttaatgtggacatagtgcaaggtttttactccattctt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33746651 |
ggtcttaatgtggacatagtgcaaggtttttactccattctt |
33746610 |
T |
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