View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_12 (Length: 358)
Name: NF3070_low_12
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 71 - 343
Target Start/End: Complemental strand, 45288055 - 45287786
Alignment:
| Q |
71 |
accaaaattgtattgttcttattcataattgtataattgattttgtgtttcatatcgctgtaaatttataagtcgcttcttcaattatatgattgagtta |
170 |
Q |
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| T |
45288055 |
accaaaattgtattgttcttattcataattgtataattgattttgtgtttcatatcactgtaaatttataagtcgcttcttcaattatatgattgagtta |
45287956 |
T |
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| Q |
171 |
actacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataattnnnnnnnnnnnnnnnnncactacacgggagacttgcaaaa |
270 |
Q |
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| T |
45287955 |
actacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataat--aaaaaaaaatgaaaaacactacacgggagacgtgcaaaa |
45287858 |
T |
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| Q |
271 |
tcttcctatggacaatgtattttcagtcttccactctcaataaatatacaaacactccgtattttgcaatact |
343 |
Q |
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| T |
45287857 |
tcttcctatggacaatgtattttcagtcttccactctcaat-aatatacaaacactccgtattttgcaatact |
45287786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 45287708 - 45287631
Alignment:
| Q |
151 |
tcaattatatgattgagttaactacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataa |
228 |
Q |
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| T |
45287708 |
tcaattatatgattgagttaactaaatattgaagaaaatatgcaaaatagatataaattcatggccctgaataaataa |
45287631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 45287596 - 45287533
Alignment:
| Q |
266 |
caaaatcttcctatggacaatgtattttcagtcttccactctcaata--aatatacaaacactc |
327 |
Q |
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| T |
45287596 |
caaaatcttcctctgaatagtgtattttcagtcttccactctcattaataatatacaaacactc |
45287533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 71 - 343
Target Start/End: Original strand, 31608742 - 31609007
Alignment:
| Q |
71 |
accaaaattgtattgttcttattcataattgtataattgattttgtgtttcatatcgctgtaaatttataagtcgcttcttcaattatatgattgagtta |
170 |
Q |
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| T |
31608742 |
accaaaattgt--tgttcttattcataattgtataattgattttgtgtttcatatcactgtaaatttataagtcgcttcttcaattatatgattgagtta |
31608839 |
T |
|
| Q |
171 |
actacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataattnnnnnnnnnnnnnnnnncactacacgggagacttgcaaaa |
270 |
Q |
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| T |
31608840 |
actacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataat--aaaaaaaaatgaaaaacactacacgggtgacttgcaaaa |
31608937 |
T |
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| Q |
271 |
tcttcctatggacaatgtattttcagtcttccactctcaataaatatacaaacactccgtattttgcaatact |
343 |
Q |
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| T |
31608938 |
tattcctatggacaatgtattttcag--ttccactctcaat-aatatacaaacactccgtattttgcaatact |
31609007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 151 - 228
Target Start/End: Original strand, 31609086 - 31609163
Alignment:
| Q |
151 |
tcaattatatgattgagttaactacatattgaagaaaatatgcaaaatgaatataaattcatggccctgtttaaataa |
228 |
Q |
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| T |
31609086 |
tcaattatatgattgagttaactaaatattgaagaaaatatgaaaaatagatataaattcatggccctgaataaataa |
31609163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 31609181 - 31609261
Alignment:
| Q |
248 |
cactacacgggagacttgcaaaatcttcctatggacaatgtattttcagtcttccactctcaata--aatatacaaacactc |
327 |
Q |
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||||||||||||| || |||||||||||| |||| | |||||||||||||||||||||||| || ||||||||| ||||| |
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| T |
31609181 |
cactacacgggaggcta-caaaatcttcctctggatagtgtattttcagtcttccactctcattaataatatacaatcactc |
31609261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 327
Target Start/End: Complemental strand, 12630677 - 12630634
Alignment:
| Q |
286 |
tgtattttcagtcttccactctcaata--aatatacaaacactc |
327 |
Q |
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| T |
12630677 |
tgtattttcagtcttccactctcattaataatatacaaacactc |
12630634 |
T |
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