View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_13 (Length: 345)
Name: NF3070_low_13
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 53490125 - 53490455
Alignment:
| Q |
13 |
agtgataagtgattaggacttcctaggattattctaccaaaccgaataagtgtttgtttgagatattgattcgtgagattcatccaaagtgctacaagtt |
112 |
Q |
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| T |
53490125 |
agtgataagtgattaggacttcctaggattattctaccaaaccgaataagtgtttatttgtgatattgattcgtgagattcatccaaagtgctacaagtt |
53490224 |
T |
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| Q |
113 |
-----------taaaaatgaagtagcttctagtagggtctatagcactttcttggctttcatcatcatccttttattacaaccgtatagtataaattcta |
201 |
Q |
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| T |
53490225 |
gatgatgagtttaaaaatgaagtagcttctagtagggtctatagcactttcttggctttcatcatcatccttttattacaaccgtat-----aaattcta |
53490319 |
T |
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| Q |
202 |
gaaacatgaaccatcaactttgtttatcgaaatttcaccgactcttgggtatatagtcgtggataaaatggtgctcaaaattctcccttccaagtccacg |
301 |
Q |
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||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53490320 |
gaagcatgaaccatcaacttttttgatcgaaatttcaccgactcttgggtaaatagtcgtggataaaatgttgctcaaaattctcccttccaagtccacg |
53490419 |
T |
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| Q |
302 |
tgcgaattttctgataccgcttgttgaagcaaagct |
337 |
Q |
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| T |
53490420 |
tgtgaattttctgataccgcttgttgaagcaaagct |
53490455 |
T |
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