View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3070_low_14 (Length: 337)
Name: NF3070_low_14
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 186 - 325
Target Start/End: Complemental strand, 53838912 - 53838773
Alignment:
| Q |
186 |
atatacaagtaggcatggcataagaggacgtgagataatgttgatattgaattagtttttgtattttattttaaaaatgttattcatgtgtttggctcca |
285 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||| |||| |
|
|
| T |
53838912 |
atatacaagtaggcatggtataagaggacgtgagataatgttgatattgaatttgtttttttattttattttaacgatgttattcatgcgtttggttcca |
53838813 |
T |
|
| Q |
286 |
accattatgtttgatgcaaatacatatcattatgtgtgtc |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53838812 |
accattatgtttgatgcaaatacatatcattatgtgtgtc |
53838773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 53839080 - 53838952
Alignment:
| Q |
18 |
cctcccattcaagaaatttgtaaacctcttcttgaacaaaattgattttcaaannnnnnnnncacaggtagcgccacatacaaatttagtacgctacaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53839080 |
cctcccattcaagaaatttgtaaacctcttcttgaacaaaattgattttcaaatttttatttcacaggtagcgccacatacaaatttagtacactacaca |
53838981 |
T |
|
| Q |
118 |
aaattggtgaacatagaggaaagacacag |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53838980 |
aaattggtgaacatagaggaaagacacag |
53838952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 53831171 - 53831123
Alignment:
| Q |
18 |
cctcccattcaagaaatttgtaaacctc-ttcttgaacaaaattgattt |
65 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
53831171 |
cctcccattgaagaaatttgtaaaccccattcttcaacaaaattgattt |
53831123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University