View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_15 (Length: 334)
Name: NF3070_low_15
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 42510549 - 42510853
Alignment:
| Q |
11 |
catcatctcatttttccataattgtcttcaccatcacaatcccaaattaatcagaatcgtgaatacaataccatctcaatctctaattcatcaccatcgc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
42510549 |
catcatctcatttttccataattgtcttcaccatcacaatcccaaattaatcagaatcgtgaatacaacaccatcacaatctctaattcatcaccatcgc |
42510648 |
T |
|
| Q |
111 |
accatcactaattcatcctaatctcgttcttccctgaattcaacaccgaatctgaacccccagtcgatgttctcgttcttcaacaccgaatccaaaccaa |
210 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42510649 |
accatcactgattcatcctaatctcgttctttcctgaattcaacaccgaatctgaaaccccagtcgatgttctcgttcttcaacatcgaatccaaaccaa |
42510748 |
T |
|
| Q |
211 |
acgttcgttcgttcttaacctcatgaacatgacaactctgaattcaacaccgaatttgaatcgttcgttcttacctcatgaacatgacaactccaaacct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || |
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| T |
42510749 |
acgttcgttcgttcttaacctcatgaacatgacaactctgaattcaacaccgaatctgaatcgttcgttcttacctcatgaacatgacaactccagatct |
42510848 |
T |
|
| Q |
311 |
ggaat |
315 |
Q |
| |
|
||||| |
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|
| T |
42510849 |
ggaat |
42510853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 36510264 - 36510558
Alignment:
| Q |
11 |
catcatctcatttttccataattgtcttcaccatcacaatcccaaattaatcagaatcgtgaatacaataccatctcaatctctaattcatcaccatcgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
36510264 |
catcatctcatttttccataattgtcttcaccatcacaatcccaaattaatcagaatcgtgaatacaacaccatcacaatctctaattcatcaccatcgc |
36510363 |
T |
|
| Q |
111 |
accatcactaattcatcctaatctcgttcttccctgaattcaacaccgaatctgaacccccagtcgatgttctcgttcttcaacaccgaatccaaaccaa |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36510364 |
accatcactgattcatcctaatctcgttcttccctgagttcaacaccgaatctgaaaccccggtcgatgttctcgttcttcaacaccgaatccaaaccaa |
36510463 |
T |
|
| Q |
211 |
acgttcgttcgttcttaacctcatgaacatgacaactctgaattcaacaccgaatttgaatcgttcgttcttacctcatgaacatgacaactcca |
305 |
Q |
| |
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|| || ||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||||||||| ||||||||| |
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| T |
36510464 |
acctttgttcgttcttaacctcatgaacatgacaactatgaattcaacactgaatctaaatcgttcgttcttacctcatgaacataacaactcca |
36510558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 19465793 - 19465647
Alignment:
| Q |
11 |
catcatctcatttttccataattgtcttcaccatcacaatcccaaattaatcagaatcgtgaatacaataccatctcaatctctaattcatcaccatcgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||| |
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|
| T |
19465793 |
catcatctcatttttccataattgtcttcaccatcacaatcccaaattaatcagaatcgtgaatacaacaccgtcacaatctctaattcatcaccatcgc |
19465694 |
T |
|
| Q |
111 |
accatcactaattcatcctaatctcgttcttccctgaattcaacacc |
157 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||||||||||||| |
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|
| T |
19465693 |
accatcactgattcatcctaatctcgttctctcttgaattcaacacc |
19465647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 19465643 - 19465538
Alignment:
| Q |
210 |
aacgttcgttcgttcttaacctcatgaacatgacaactctgaattcaacaccgaatttgaatcgttcgttcttacctcatgaacatgacaactccaaacc |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| | | |
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|
| T |
19465643 |
aacgttcgttcgttcttaacctcatggacatgacaactctgaattcaacactgaatctgaatcgtttgttcttacctcatgaacatgacaactccagatc |
19465544 |
T |
|
| Q |
310 |
tggaat |
315 |
Q |
| |
|
|||||| |
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|
| T |
19465543 |
tggaat |
19465538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 34438847 - 34439028
Alignment:
| Q |
11 |
catcatctcatttttccataattgtcttcaccatcacaatcccaaattaatcagaatcgtgaatacaataccatctcaatctctaattcatcaccatcgc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
34438847 |
catcatctcatttttccataattgtcttcaccatcacaatcccaaattaatcagaatcgtgaatacaacaccatcacaatctctaattcatcaccatcgc |
34438946 |
T |
|
| Q |
111 |
accatcactaattcatcctaatctcgttcttccctgaattcaacaccgaatctgaacccccagtcgatgttctcgttcttca |
192 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
34438947 |
accatcactgattcatcctaatctcgttcttctctgaattcaacattgaatctgaaaccccattcgatgttctcgttcttca |
34439028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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