View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_17 (Length: 326)
Name: NF3070_low_17
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 33557518 - 33557838
Alignment:
| Q |
1 |
agtcacgtaaaggattaagcttttacaatatgtaagaaaagaatatctccttttttgggacaaaacttatgtaagaaatgatccgtggtagatggtgttt |
100 |
Q |
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| T |
33557518 |
agtcacgtaaaggattaagcttttacaatatgtaagaaaagaatatctccttttttgggacaaaacttatgtaagaaatgatccgtggtagatggtattt |
33557617 |
T |
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| Q |
101 |
aaaattattagaaatttttgcggcaaagagagtgacataatt-atgtcggtttaatacgagttacatacttatttgttgttgtttatattg----aatta |
195 |
Q |
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| T |
33557618 |
aaaattattagaaatttttacggcaaagagagtgacataattgatgtcggtttaatacgagttacatatttatttgttgttgtttttattgaattaatta |
33557717 |
T |
|
| Q |
196 |
atatcaattaagttattatctcaattgtaaaaattaagaggatcgctaacctctactattaagaaatgacttgtgccatatttgaaattttaaacatttt |
295 |
Q |
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| T |
33557718 |
atatcaattaagttattatctcaattgtaaaaattaagaggatcgctaacctctactattaagaaatgacttgtgccatatttgaaattttaaacatttt |
33557817 |
T |
|
| Q |
296 |
ttaagtgttgatccacctatg |
316 |
Q |
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||||||||||||||||||||| |
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| T |
33557818 |
ttaagtgttgatccacctatg |
33557838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 476774 - 476707
Alignment:
| Q |
190 |
gaattaatatcaattaagttattatctcaattgtaaaaattaagaggatcgctaacctctactattaa |
257 |
Q |
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| T |
476774 |
gaattgatatcaattgagtcattatctcaattgtaaaaatgacaaggatcattaacctccactattaa |
476707 |
T |
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