View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_18 (Length: 324)
Name: NF3070_low_18
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 10752850 - 10753104
Alignment:
| Q |
56 |
tttgatcaatcagcctctcatgagcagatacaaaataatattaacaaaacaagctaagaaaatttactaataatcattcagaaaaccaaaacttaaatat |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10752850 |
tttgatcaatcagcctctcatgagcagatacaaaataatattaacaaaacaagctaagaaaatttactaataatcattcagaaaaccaaaacttaaatat |
10752949 |
T |
|
| Q |
156 |
ctagagcagccatcttcacgcatctacttcagtcttccatttctttttatcgagcaagcttagcttcaaacaagcacacatttattcagtatgagagaag |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10752950 |
ctagagcagccatcttcacgcatctacttcagtcttccatttctttttatcgagcaagcttagcttcaaacaagcacacatttattcagtatgagagaag |
10753049 |
T |
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| Q |
256 |
aag-aaaaattgctattataaagcataatgctagatatatagatataacaggatt |
309 |
Q |
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||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10753050 |
aagaaaaaaacgctaatataaagcataatgctagatatatagatataacaggatt |
10753104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 111 - 249
Target Start/End: Complemental strand, 2983185 - 2983048
Alignment:
| Q |
111 |
aagaaaatttactaataatcattcagaaaaccaaaact-taaatatctagagcagccatcttcacgcatctacttcagtcttccatttctttttatcgag |
209 |
Q |
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|||||| || ||| ||||||||||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |
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| T |
2983185 |
aagaaagttaacttataatcattcagaaagtcaaaactcttaatatctagagcagccatcttcacgcatctccttcagtcttccatttc-ttttattgag |
2983087 |
T |
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| Q |
210 |
caagcttagcttcaaacaagcacacatttattcagtatga |
249 |
Q |
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| T |
2983086 |
caagc-tagcttaaaacaagcacacattaaatcagtatga |
2983048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 2708835 - 2708934
Alignment:
| Q |
77 |
gagcagatacaaaataatattaacaaaacaagctaagaaaatttactaataatcattcagaaaa--ccaaaacttaaatatctagagcagccatcttcac |
174 |
Q |
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||||| ||||||||||| |||||||||| ||||||| ||||| ||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
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| T |
2708835 |
gagcaaatacaaaataacattaacaaaataagctaaagaaattcactaataatcattcataaaaataaaaaacttgaatatctagagcagccatcttcac |
2708934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 2706292 - 2706406
Alignment:
| Q |
101 |
aaaacaagctaagaaaatttactaataatcattcagaaaaccaaaa-cttaaatatctagagcagccatcttcacgcatctacttcagtcttccatttct |
199 |
Q |
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|||||||| ||||||||| |||||||||||| ||||||| |||| ||| |||||||||||||||||||||||| |||| | ||||| |||||||| |
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| T |
2706292 |
aaaacaagaaaagaaaattaactaataatcatgcagaaaataaaaaacttgaatatctagagcagccatcttcacaaatcttttccagtcctccatttc- |
2706390 |
T |
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| Q |
200 |
ttttatcgagcaagct |
215 |
Q |
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|||||| ||||||||| |
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| T |
2706391 |
ttttattgagcaagct |
2706406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 2992279 - 2992202
Alignment:
| Q |
58 |
tgatcaatcagcctctcatgagcagatacaaaataatattaacaaaacaagctaagaaaatttactaataatcattcagaaaa |
140 |
Q |
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|||||||||| ||||| ||||||| ||||||||||| ||||||| || ||||||||| |||||||||||||||||||| |
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| T |
2992279 |
tgatcaatcatcctcttatgagcaaatacaaaataacgttaacaagac-----aagaaaattcactaataatcattcagaaaa |
2992202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 2992200 - 2992118
Alignment:
| Q |
165 |
ccatcttcacgcatctacttcagtcttccatttctttttatcgagcaagcttagcttcaaacaagcacacatttattcagtatga |
249 |
Q |
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|||||||||||||||| || ||||||||||| || |||||| |||| ||| |||||| | ||||| ||||||||| ||||||||| |
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| T |
2992200 |
ccatcttcacgcatctcctccagtcttccatgtc-ttttattgagccagc-tagcttaacacaagaacacatttaatcagtatga |
2992118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 2708786 - 2708839
Alignment:
| Q |
111 |
aagaaaatttactaataatcattcagaaaaccaaaa-cttaaatatctagagca |
163 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||| ||||||||||||| |
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| T |
2708786 |
aagaaaattaactaataatcattcagaaaataaaaatcttgaatatctagagca |
2708839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 18358665 - 18358582
Alignment:
| Q |
58 |
tgatcaatcagcctctcatgagcagatacaaaataatattaacaaaacaagct-aagaaaatttactaataatcattcagaaaa |
140 |
Q |
| |
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|||||||||| ||||| ||||||| ||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
18358665 |
tgatcaatcatcctcttatgagcaaataaaaaataacgttaacaaaacaaaaacaagaaaattcactaataatcattcagaaaa |
18358582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 18358580 - 18358498
Alignment:
| Q |
165 |
ccatcttcacgcatctacttcagtcttccatttctttttatcgagcaagcttagcttcaaacaagcacacatttattcagtatga |
249 |
Q |
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|||||||||||||||| || ||||||||||| || |||||| |||| ||| |||||| | ||||| ||| ||||| ||||||||| |
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| T |
18358580 |
ccatcttcacgcatctcctccagtcttccatgtc-ttttattgagccagc-tagcttaacacaagaacatatttaatcagtatga |
18358498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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