View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_2 (Length: 622)
Name: NF3070_low_2
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 12 - 605
Target Start/End: Original strand, 39263493 - 39264086
Alignment:
| Q |
12 |
atcatcacttcttgagatcctagcaggtaaacacagaccccaaaaagggtctgtgttgttgaaccagaagccagtagacaaatctcagttcagaaagcta |
111 |
Q |
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| T |
39263493 |
atcatcacttcttgagatcctagcaggtaaacacagaccacaaaaagggtctgtgttgttgaaccagaagccagtagacaaatctcagttcagaaagcta |
39263592 |
T |
|
| Q |
112 |
tcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaaggctaaagcttcctcaacaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39263593 |
tcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaaggctaaagcttcctcaacaac |
39263692 |
T |
|
| Q |
212 |
aacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggtactagaattggtgatgatcgagtccgaggtatatcaggcgg |
311 |
Q |
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| T |
39263693 |
aacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggtactagaattggtgatgatcgagtccgaggtatatcaggcgg |
39263792 |
T |
|
| Q |
312 |
tgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgacgaaccaacttcagggcttgatagtacttcagctttg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39263793 |
tgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgatgaaccaacttcagggcttgatagtacttcagctttg |
39263892 |
T |
|
| Q |
412 |
caaattattgacatgcttaaggttatggctgaaactagaggaagaactataatactaagtattcatcaaccaggtttcagaatagtgaagctgttcaatt |
511 |
Q |
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| T |
39263893 |
caaattattgacatgcttaaggttatggctgaaactagaggaagaactataatactaagtattcatcaaccaggtttcagaatagtgaagctgttcaatt |
39263992 |
T |
|
| Q |
512 |
cattgttgttgttagctaatggttctgtgttacatcatggaactgctgatttactgagtgtgaatttgagattaatgagtctagagcttcctct |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
39263993 |
cattgttgttgttagctaatggttctgtgttacatcatggaactgctgatttactgagtgtgaatttgagattgatgggtctagagcttcctct |
39264086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 91 - 605
Target Start/End: Original strand, 44067299 - 44067819
Alignment:
| Q |
91 |
aaatctcagttcagaaagctatcaggatatgttactcaaaaggacactttgtttcccttacttacagttgaagaaaccatgatgttcagtgcaaaactaa |
190 |
Q |
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||||||||||||||||| | ||||| |||||||| ||||| ||||| | || |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44067299 |
aaatctcagttcagaaaaatttcagggtatgttacacaaaaagacacccttttccccttacttacagttgaagaaaccatgatgtttagtgcaaaactaa |
44067398 |
T |
|
| Q |
191 |
ggctaaagcttcctcaacaacaacaatgttcaagggtcaagtcactgattaaagagcttggacttgatcatgttgctggtactagaat------tggtga |
284 |
Q |
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| |||| ||| ||| | || ||| | | | | ||| |||||| ||||| |||||||||| ||| ||||||| | |||||||| | ||| || |
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| T |
44067399 |
agttaaatctttctccagaaaaactaagctgtaaggttaagtcattgattcaagagcttggtcttagtcatgtttcaagtactagagtaggagatggaga |
44067498 |
T |
|
| Q |
285 |
tgatcgagtccgaggtatatcaggcggtgaaaggcgaagagtttctattggtgttgaagtcatacatgatccaaaagttttgattcttgacgaaccaact |
384 |
Q |
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||| | ||||| || ||||| || ||||| ||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
44067499 |
tgacagggtccgcggaatatccggtggtgagaggcgccgtgtttccattggtgttgaagtcatacatgatccaaaagtgttgattcttgatgaagcaact |
44067598 |
T |
|
| Q |
385 |
tcagggcttgatagtacttcagctttgcaaattattgacatgcttaaggttatggctgaaactagaggaagaactataatactaagtattcatcaaccag |
484 |
Q |
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||||| ||||| ||||| |||||| ||||||| ||||| ||||| || || ||||||||| |||| |||||||||||||||||||||||||||||||| | |
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| T |
44067599 |
tcaggtcttgacagtacctcagctctgcaaataattgatatgctgaaagtcatggctgaatctaggggaagaactataatactaagtattcatcaacccg |
44067698 |
T |
|
| Q |
485 |
gtttcagaatagtgaagctgttcaattcattgttgttgttagctaatggttctgtgttacatcatggaactgctgatttactgagtgtgaatttgagatt |
584 |
Q |
| |
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| ||| | ||||||||| |||| |||||| | ||||||| | ||||| ||||||||||||||||||||| ||||| || ||||||| |||| || |
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| T |
44067699 |
ggttccggatagtgaagttgttgaattcaatactgttgttggtgaatggcagtgtgttacatcatggaactgcagatttgttggatgtgaatctgaggtt |
44067798 |
T |
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| Q |
585 |
aatgagtctagagcttcctct |
605 |
Q |
| |
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||| || ||||||||||||| |
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| T |
44067799 |
gatgggtttagagcttcctct |
44067819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 32413517 - 32413474
Alignment:
| Q |
298 |
ggtatatcaggcggtgaaaggcgaagagtttctattggtgttga |
341 |
Q |
| |
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|||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
32413517 |
ggtatatcaggcggggaaaggcgtagagtttccattggtgttga |
32413474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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