View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3070_low_20 (Length: 316)
Name: NF3070_low_20
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 1901634 - 1901937
Alignment:
| Q |
9 |
atattgctataatggatccactctgggcccaatttgtcatggctaaatat--ggtaacaaatactgatattttataaaaagtttgagatattttgtcaaa |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1901634 |
atattgctataatggacccactctgggcccaatttgtcatggctaaatatatggtaacaaataccgatattttataaaaagtttgagatattttgtcaaa |
1901733 |
T |
|
| Q |
107 |
accattatcggaaattattcttatatagtatgtcaaaaaatcaatatat--------ctatgaatttaatagtaatagctttatattttattttggttca |
198 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1901734 |
atcattatcggaaattattcttatatagtatgtcaaaaaatcaatatataatatactctatcaatttaatagtaatagctttatattttattttggttca |
1901833 |
T |
|
| Q |
199 |
agaaatggtcaaaataaaaacctgatcatcaaaacatgtcacagaaattctgaagttcatcaaggtttgtgattgttgtgcaagtgacagaaacatgaca |
298 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1901834 |
aaaaatggtcaaaatcaaaacctgatcatcaaaacatgtcacagaaattctgaagttcatcaaggtttgtgattgttgtgcaagtgacagaaacatgaca |
1901933 |
T |
|
| Q |
299 |
agaa |
302 |
Q |
| |
|
|||| |
|
|
| T |
1901934 |
agaa |
1901937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 1895465 - 1895526
Alignment:
| Q |
241 |
agaaattctgaagttcatcaaggtttgtgattgttgtgcaagtgacagaaacatgacaagaa |
302 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
1895465 |
agaaattctgaagttcaccaaggtttgtaattgttgtgtaagtgatagaaacatgacaagaa |
1895526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University