View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3070_low_22 (Length: 305)

Name: NF3070_low_22
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3070_low_22
NF3070_low_22
[»] chr2 (1 HSPs)
chr2 (152-291)||(1234915-1235054)
[»] chr4 (5 HSPs)
chr4 (151-291)||(6663671-6663811)
chr4 (150-291)||(19887940-19888080)
chr4 (150-289)||(6660095-6660234)
chr4 (152-273)||(31890159-31890276)
chr4 (183-265)||(43288064-43288146)
[»] chr8 (2 HSPs)
chr8 (1-136)||(23168504-23168639)
chr8 (1-136)||(23175662-23175797)
[»] chr5 (3 HSPs)
chr5 (154-291)||(25634768-25634905)
chr5 (151-291)||(25641301-25641443)
chr5 (152-276)||(34350970-34351091)
[»] chr1 (1 HSPs)
chr1 (156-291)||(29401691-29401826)
[»] chr7 (2 HSPs)
chr7 (152-287)||(38415209-38415344)
chr7 (183-265)||(32352252-32352334)
[»] chr6 (2 HSPs)
chr6 (180-245)||(17373348-17373414)
chr6 (183-247)||(2935965-2936029)
[»] chr3 (2 HSPs)
chr3 (214-263)||(9372054-9372103)
chr3 (214-263)||(14655081-14655130)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 152 - 291
Target Start/End: Complemental strand, 1235054 - 1234915
Alignment:
Q  152 tgttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatcaa 251  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1235054 tgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaataaacaagagagatatcaa 1234955  T
Q  252 gtgaacttatctgtgctatatattagtctatgacttggcc 291  Q
    || |||||||||||||||||||||||||||||||||||||    
T  1234954 gtaaacttatctgtgctatatattagtctatgacttggcc 1234915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 151 - 291
Target Start/End: Original strand, 6663671 - 6663811
Alignment:
Q  151 ttgttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatca 250  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6663671 ttgttgtaaaatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaataaacaagagagatatca 6663770  T
Q  251 agtgaacttatctgtgctatatattagtctatgacttggcc 291  Q
    ||| ||||||| |||||||||||||||||||||| ||||||    
T  6663771 agtaaacttatatgtgctatatattagtctatgatttggcc 6663811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 150 - 291
Target Start/End: Original strand, 19887940 - 19888080
Alignment:
Q  150 tttgttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatc 249  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19887940 tttgttgtaaaatatttacatagaattctatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaataaacaagagagatatc 19888039  T
Q  250 aagtgaacttatctgtgctatatattagtctatgacttggcc 291  Q
    |||| | ||||| |||||||||||||||||||||||||||||    
T  19888040 aagtaatcttat-tgtgctatatattagtctatgacttggcc 19888080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 150 - 289
Target Start/End: Original strand, 6660095 - 6660234
Alignment:
Q  150 tttgttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatc 249  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||    
T  6660095 tttgttgtaaaatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagaaaataaataagagagatatc 6660194  T
Q  250 aagtgaacttatctgtgctatatattagtctatgacttgg 289  Q
    |||| |||||||||| ||||||||||||||||||| ||||    
T  6660195 aagtaaacttatctgcgctatatattagtctatgatttgg 6660234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 31890276 - 31890159
Alignment:
Q  152 tgttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatcaa 251  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||    
T  31890276 tgttgtaaaatatttacttagaattatatccaaataataatcaacatataaaaac----aataattaagtattaaagagaataaacaagagagatatcaa 31890181  T
Q  252 gtgaacttatctgtgctatata 273  Q
    || ||||| |||||| ||||||    
T  31890180 gtaaacttttctgtgttatata 31890159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Complemental strand, 43288146 - 43288064
Alignment:
Q  183 aaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatcaagtgaacttatctgt 265  Q
    |||||||||||| |||||||| | ||  |  |||||| |||| ||| |||| |||||||| |||||||||| |||||||||||    
T  43288146 aaataataatcatcatataaataaaatcatcaattaaatatttaagggaataaacaagagggatatcaagtaaacttatctgt 43288064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 23168504 - 23168639
Alignment:
Q  1 tggatgttataactctggaatgattatggatggttccgtatggcttgatgattttggttcctttaggctgttgtaagattgtatttggttccgaactggt 100  Q
    ||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23168504 tggatgttacaactctggaaagattatggatggttttgtatggcttgatgattttggttcttttaggctgttgtaagattgtatttggttccgaactggt 23168603  T
Q  101 atatactctttcatgtagatgtacaaatttgcttgt 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  23168604 atatactctttcatgtagatgtacaaatttgcttgt 23168639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 23175662 - 23175797
Alignment:
Q  1 tggatgttataactctggaatgattatggatggttccgtatggcttgatgattttggttcctttaggctgttgtaagattgtatttggttccgaactggt 100  Q
    |||||||||||||||||||| |||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23175662 tggatgttataactctggaaagattatggatggctttgtatggcttgatgattttagttcctttaggctgttgtaagattgtatttggttccgaactggt 23175761  T
Q  101 atatactctttcatgtagatgtacaaatttgcttgt 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  23175762 atatactctttcatgtagatgtacaaatttgcttgt 23175797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 25634768 - 25634905
Alignment:
Q  154 ttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatcaagt 253  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25634768 ttgtaaaatatttacatagaattacatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaataaacaagagagatatcaagt 25634867  T
Q  254 gaacttatctgtgctatatattagtctatgacttggcc 291  Q
     ||||||| |||||| ||||||||||||||||||||||    
T  25634868 aaacttatatgtgctgtatattagtctatgacttggcc 25634905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 151 - 291
Target Start/End: Original strand, 25641301 - 25641443
Alignment:
Q  151 ttgttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatca 250  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  25641301 ttgttgtaaaatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtatcaaagagaataaacaagagaaatatca 25641400  T
Q  251 agtgaactta--tctgtgctatatattagtctatgacttggcc 291  Q
    ||| ||||||  | |||||| | ||||||||||||||||||||    
T  25641401 agtaaacttatttttgtgctgtgtattagtctatgacttggcc 25641443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 34351091 - 34350970
Alignment:
Q  152 tgttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatcaa 251  Q
    |||||||| ||||| | ||| |||||| |||||||||||||||||| || ||||  |||||||||||| |||| |||||||| || ||||||||||||||    
T  34351091 tgttgtaaaatattgatataaaattatctccaaataataatcaacacat-aaaatgagaaataattaaatattgaagagaat-aaaaagagagatatcaa 34350994  T
Q  252 gtgaacttatctgtgctatatatta 276  Q
     | |||||||| |||||||||||||    
T  34350993 at-aacttatcagtgctatatatta 34350970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 156 - 291
Target Start/End: Original strand, 29401691 - 29401826
Alignment:
Q  156 gtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatcaagtga 255  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |    
T  29401691 gtaaaatatttacatagaattatatcccaataataatcaacatataaaaacaagaaataattaagtatcaaagagaataaacaagaaagatatcaagtaa 29401790  T
Q  256 acttatctgtgctatatattagtctatgacttggcc 291  Q
    | ||||||||||||||||||||||||||||||||||    
T  29401791 atttatctgtgctatatattagtctatgacttggcc 29401826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 287
Target Start/End: Complemental strand, 38415344 - 38415209
Alignment:
Q  152 tgttgtaagatatttacatagaattatatccaaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatcaa 251  Q
    |||||||| || || ||||| |||||| ||||||||||||||||||||||||||  ||||||| |||| ||||||| ||||| |||||||||||||||||    
T  38415344 tgttgtaaaattttgacataaaattatttccaaataataatcaacatataaaaatgagaaatagttaaatattaaaaagaatcaacaagagagatatcaa 38415245  T
Q  252 gtgaacttatctgtgctatatattagtctatgactt 287  Q
    || || |||||| | |||||||||| | ||||||||    
T  38415244 gtaaatttatctttactatatattattgtatgactt 38415209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 32352252 - 32352334
Alignment:
Q  183 aaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagatatcaagtgaacttatctgt 265  Q
    |||||||||||| |||||||| | ||  |  |||||| |||| ||| |||| |||||||| |||||||||| |||||||||||    
T  32352252 aaataataatcatcatataaataaaatcatcaattaaatatttaagcgaataaacaagagggatatcaagtaaacttatctgt 32352334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 17373414 - 17373348
Alignment:
Q  180 tccaaataataatcaacatataaaaacaag-aaataattaagtattaaagagaatgaacaagagaga 245  Q
    |||||||| |||||||||||||||||  || ||| |||||| ||||||||||||| |||||||||||    
T  17373414 tccaaatagtaatcaacatataaaaatgagcaaacaattaaatattaaagagaataaacaagagaga 17373348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 2935965 - 2936029
Alignment:
Q  183 aaataataatcaacatataaaaacaagaaataattaagtattaaagagaatgaacaagagagata 247  Q
    ||||||||||||| ||||||| | |||||  ||| || ||||||||||||| |||||||| ||||    
T  2935965 aaataataatcaatatataaataaaagaatcaataaaatattaaagagaataaacaagagggata 2936029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 9372054 - 9372103
Alignment:
Q  214 aattaagtattaaagagaatgaacaagagagatatcaagtgaacttatct 263  Q
    |||||||||||||||||||| |||||||| |||| ||||| |||||||||    
T  9372054 aattaagtattaaagagaataaacaagagggataacaagtaaacttatct 9372103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 14655130 - 14655081
Alignment:
Q  214 aattaagtattaaagagaatgaacaagagagatatcaagtgaacttatct 263  Q
    |||||| ||||||| ||||| ||||||||||||| ||||| |||||||||    
T  14655130 aattaaatattaaatagaattaacaagagagataacaagtaaacttatct 14655081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University