View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3070_low_24 (Length: 297)

Name: NF3070_low_24
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3070_low_24
NF3070_low_24
[»] chr4 (2 HSPs)
chr4 (25-280)||(35202317-35202572)
chr4 (143-258)||(22483403-22483518)
[»] chr2 (2 HSPs)
chr2 (125-281)||(3945850-3946006)
chr2 (124-258)||(39741065-39741199)
[»] chr1 (2 HSPs)
chr1 (126-279)||(24878842-24878995)
chr1 (125-258)||(34645998-34646131)
[»] chr5 (1 HSPs)
chr5 (169-281)||(13481014-13481126)
[»] chr3 (2 HSPs)
chr3 (124-258)||(41895808-41895942)
chr3 (124-279)||(34976123-34976278)
[»] chr8 (2 HSPs)
chr8 (131-279)||(28437310-28437458)
chr8 (170-279)||(5211208-5211317)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 25 - 280
Target Start/End: Complemental strand, 35202572 - 35202317
Alignment:
Q  25 agaaggagggtttgaattagcactagtaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaggagtgatttggtcgtttaagacgt 124  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35202572 agaaggagggtttgaattagcactattaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaagagtgatttggtcgtttaagacgt 35202473  T
Q  125 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202472 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 35202373  T
Q  225 aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacac 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35202372 aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacac 35202317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 22483403 - 22483518
Alignment:
Q  143 ccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagt 242  Q
    |||||||||||||| || || ||||| |||||| | |||||||||||  |||| |  |||||||| | |||||||||||| | ||| || || || ||||    
T  22483403 ccaccaacaggaacattccttagtgtaccacctttagtccaatatctcctacaagacttgcagaaatatcttggttgtgaaagactgtaattgttgtagt 22483502  T
Q  243 aacagaatttagtgtt 258  Q
    |||| ||||| |||||    
T  22483503 aacaaaatttggtgtt 22483518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 125 - 281
Target Start/End: Original strand, 3945850 - 3946006
Alignment:
Q  125 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 224  Q
    |||||| ||||| ||||||||||||||||||| |||||||| || ||||||||||||||||| | ||| || ||||| ||||| |||||||||||||| |    
T  3945850 ttgtttcttctgtaaccaccaccaacaggaacatttctaagagtaccacctcttgtccaataacgtttgcaagctttacagaaatgtcttggttgtgaca 3945949  T
Q  225 aactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggacact 281  Q
    |||| ||||| || |||||||| || || ||||||||||| ||||||||||||||||    
T  3945950 aactgtagttgttgtagtaacaaaactttgtgtttgatgagtcacaacgtggacact 3946006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 39741199 - 39741065
Alignment:
Q  124 tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat 223  Q
    ||||||||||||||| ||||| ||||||||||| || || | |||||||||| | |||||||| ||| | || | ||||||||| | |||||| || |      
T  39741199 tttgttttttctgcatccacctccaacaggaacattccttaatgttccacctttggtccaataccttctgcaagatttgcagaaatatcttggctgagta 39741100  T
Q  224 aaactatagttattatagtaacagaatttagtgtt 258  Q
    | ||| ||||| || || ||||||||||| |||||    
T  39741099 agactgtagttgttgtaataacagaatttggtgtt 39741065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 24878995 - 24878842
Alignment:
Q  126 tgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataa 225  Q
    ||||||||||||| ||||||||||||||||| ||||| || | ||||||| |||||||||| ||| | ||  ||||||| || | ||||||||| | |||    
T  24878995 tgttttttctgcagccaccaccaacaggaacatttctgagggatccaccttttgtccaataccttctgcatcctttgcaaaaatatcttggttgagttaa 24878896  T
Q  226 actatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca 279  Q
     || |||||||| ||||| |||||||| |||||||| ||| |||| | ||||||    
T  24878895 gctgtagttattgtagtagcagaattttgtgtttgaagaaccacatcttggaca 24878842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 34646131 - 34645998
Alignment:
Q  125 ttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgata 224  Q
    |||||||||||  |||||||||||||||||| ||||||||  | |||||||   |||||||| ||| |||| | ||||||||| | |||||||||||  |    
T  34646131 ttgttttttcttgaaccaccaccaacaggaatgtttctaatggatccaccttgagtccaataccttctacatgttttgcagaaatatcttggttgtgtca 34646032  T
Q  225 aactatagttattatagtaacagaatttagtgtt 258  Q
    |||||||||| || |||||||| ||||| |||||    
T  34646031 aactatagttgttgtagtaacaaaattttgtgtt 34645998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 13481126 - 13481014
Alignment:
Q  169 tccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagtaacagaatttagtgtttgatgaatca 268  Q
    ||||||| |||||||||||||| |||| | ||||||||| ||||||||||||| ||| |||||||| || ||||| |||||||| ||||| | ||| |||    
T  13481126 tccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgttaagctatagttgttgtagtagcagaattttgtgttgggtgagtca 13481027  T
Q  269 caacgtggacact 281  Q
    || | ||||||||    
T  13481026 catcttggacact 13481014  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 41895942 - 41895808
Alignment:
Q  124 tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat 223  Q
    ||||||||||||  |||||||||| |||||||| ||||| |  |  ||||||   |||||||| ||| |||||| |||||| ||||  |||||||||||     
T  41895942 tttgttttttcttgaaccaccacctacaggaacatttcttaaagaaccaccttcagtccaataccttctacaggttttgcaaaagtaccttggttgtgag 41895843  T
Q  224 aaactatagttattatagtaacagaatttagtgtt 258  Q
    |  ||||||||||| |||||||||||||| |||||    
T  41895842 aggctatagttattgtagtaacagaattttgtgtt 41895808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 279
Target Start/End: Original strand, 34976123 - 34976278
Alignment:
Q  124 tttgttttttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgat 223  Q
    |||||||||||| || || ||||||||||| | ||| ||||||||||| ||| | |||||||| ||| |||| |  ||||||||||  ||||| || ||     
T  34976123 tttgttttttctacagcctccaccaacagggatgttcctaagtgttcctcctttggtccaataccttctacaagtcttgcagaagtaccttggctgagag 34976222  T
Q  224 aaactatagttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca 279  Q
    | ||| || || || ||||| |||||||| ||||  | ||||||||| | ||||||    
T  34976223 agactgtaattgttgtagtagcagaatttggtgtgagttgaatcacaccttggaca 34976278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 279
Target Start/End: Complemental strand, 28437458 - 28437310
Alignment:
Q  131 tttctgcaaccaccaccaacaggaacgtttctaagtgttccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactat 230  Q
    ||||| |||||||||||||  |||||||| |  |  | ||||||  |||||||||||||| | || | ||||||||| ||||||||||| |  | ||| |    
T  28437458 tttctacaaccaccaccaatcggaacgttacgcaacgatccaccatttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgt 28437359  T
Q  231 agttattatagtaacagaatttagtgtttgatgaatcacaacgtggaca 279  Q
    |||| || |||||||||||||| |||||||  |||||||| | ||||||    
T  28437358 agttgttgtagtaacagaattttgtgtttggagaatcacatcttggaca 28437310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 279
Target Start/End: Original strand, 5211208 - 5211317
Alignment:
Q  170 ccacctcttgtccaatatcttttacaggctttgcagaagtgtcttggttgtgataaactatagttattatagtaacagaatttagtgtttgatgaatcac 269  Q
    |||||| ||||||||||||||||||||  |||||| || || | ||||||||| | | | ||||| || ||||| |||||||| |||||   ||| ||||    
T  5211208 ccaccttttgtccaatatcttttacagtttttgcaaaaatggcgtggttgtgagagattgtagttgttgtagtagcagaattttgtgttgtttgattcac 5211307  T
Q  270 aacgtggaca 279  Q
    ||||||||||    
T  5211308 aacgtggaca 5211317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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