View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_26 (Length: 273)
Name: NF3070_low_26
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 250499 - 250689
Alignment:
| Q |
1 |
tctcccatcatctctttcaacaaactctgaaggtaacgcacttcatgctttcagaaccagactttctgatcccaacaacgtccttcaaagctgggaccct |
100 |
Q |
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| T |
250499 |
tctcccatcatctctttcaacaaactctgaaggtaacgcacttcatgctttcagaaccagactttctgatcccaacaacgtccttcaaagctgggaccct |
250598 |
T |
|
| Q |
101 |
actcttgttaactcttgtacttggttccatgttacctgcgactccaacaatcatgttattcgcttgtaagttactaaccagaatatagatc |
191 |
Q |
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| T |
250599 |
actcttgttaactcatgtacttggttccatgttacctgcgactccaacaatcatgttattcgcttgtaagttactaaccagaatatagatc |
250689 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 48318033 - 48317924
Alignment:
| Q |
41 |
cttcatgctttcagaaccagactttctgatcccaacaacgtccttcaaagctgggaccctactcttgttaactcttgtacttggttccatgttacctgcg |
140 |
Q |
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| T |
48318033 |
cttcatgtttttaggaacagtctttctgaccccaacaatgtgcttcagagctgggacccaacattggttaatccatgtacttggtttcatgttacatgtg |
48317934 |
T |
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| Q |
141 |
actccaacaa |
150 |
Q |
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| T |
48317933 |
actccaacaa |
48317924 |
T |
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