View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_27 (Length: 270)
Name: NF3070_low_27
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 10234060 - 10234226
Alignment:
| Q |
2 |
gtgagtgaacttactaactaataggtcaggtcgccatttgccggaaactatttcagcaaaaggtttatacttgatgtgcgtattagggatgtcattgagg |
101 |
Q |
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| T |
10234060 |
gtgagtgaacttactaactaataggtcaggtcgccatttgctggaaactatttcagcaaaaggcttatacttgatgtgcgtattagagatgtcattgagg |
10234159 |
T |
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| Q |
102 |
ttgacatcaacaacagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaaca |
168 |
Q |
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| T |
10234160 |
ttgacatcaacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaaca |
10234226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 10234277 - 10234310
Alignment:
| Q |
193 |
acttcaagtgttttgtcataaacagatttgtatg |
226 |
Q |
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| T |
10234277 |
acttcaagtgttttgtcataaacagatttgtatg |
10234310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 10234295 - 10234328
Alignment:
| Q |
163 |
taaacagatttgtatgtagttggaatgagtactt |
196 |
Q |
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| T |
10234295 |
taaacagatttgtatgcagttggaatgagtactt |
10234328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 251
Target Start/End: Original strand, 10234265 - 10234293
Alignment:
| Q |
223 |
tatgtagaattaacttcaagtgttttgtc |
251 |
Q |
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| T |
10234265 |
tatgtagaattaacttcaagtgttttgtc |
10234293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 8336944 - 8337110
Alignment:
| Q |
2 |
gtgagtgaacttactaactaataggtcaggtcgccatttgccggaaactatttcagcaaaaggtttatacttgatgtgcgtattagggatgtcattgagg |
101 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8336944 |
gtgagtgaacttactaaataataggtcaggtcgccattttccgaaaactatttcagcaaaaggcttatacttgatgtgcgtattagggatgtcattgagg |
8337043 |
T |
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| Q |
102 |
ttgacatcaacaacagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaaca |
168 |
Q |
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| T |
8337044 |
ttgacatcaacagcagttgttccaccagtccatattaacttgtacttatgatcagaaactttaaaca |
8337110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 8337161 - 8337194
Alignment:
| Q |
193 |
acttcaagtgttttgtcataaacagatttgtatg |
226 |
Q |
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| T |
8337161 |
acttcaagtgttttgtcataaacagatttgtatg |
8337194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 251
Target Start/End: Original strand, 8337149 - 8337177
Alignment:
| Q |
223 |
tatgtagaattaacttcaagtgttttgtc |
251 |
Q |
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| T |
8337149 |
tatgtagaattaacttcaagtgttttgtc |
8337177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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