View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_28 (Length: 269)
Name: NF3070_low_28
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 2794164 - 2793922
Alignment:
| Q |
10 |
catcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaatcagttataacctt |
109 |
Q |
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| T |
2794164 |
catcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaatcagttataagctt |
2794065 |
T |
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| Q |
110 |
tccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaatagagtcgtttttcagaatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2794064 |
tccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaacagagtcgtttttcagaatg |
2793965 |
T |
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| Q |
210 |
gaaagaatctcatcagcagcacctctgataatcccaagcggct |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2793964 |
gaaagaatctcatcagcagcacctctgataatcccaagcggct |
2793922 |
T |
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