View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_29 (Length: 264)
Name: NF3070_low_29
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 43233202 - 43233445
Alignment:
| Q |
18 |
ataaggagtgggaaaagttggcagtgtcaccctttcaaattaaatttgggatgcaagtttgtttaggtgtccaatatcagc---aatacatagaggatta |
114 |
Q |
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| T |
43233202 |
ataaggagtgggaaaagttggcagtgtcaccctttcaaa----atttcggatgcaagtttgtttaggtgtccaatatcagcagcaatacatagaggatta |
43233297 |
T |
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| Q |
115 |
ccaattttgtttactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattca |
214 |
Q |
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| T |
43233298 |
ccaattttgtttactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattca |
43233397 |
T |
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| Q |
215 |
ttttaggttgacttgaagtctacggtataagtttatttttcttctctc |
262 |
Q |
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| T |
43233398 |
ttttaggttgacttgaagtctacggtataagtttatttttcttctctc |
43233445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 31982922 - 31982982
Alignment:
| Q |
126 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagt |
186 |
Q |
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| T |
31982922 |
tactcatacgttttgaatctaatgtttttctttcaattgtaactttgtcacacctgcaagt |
31982982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 8024261 - 8024397
Alignment:
| Q |
126 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttga |
225 |
Q |
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| T |
8024261 |
tactcatacgttttgaatctaatgtttttctttcaatggtaactttgtcccacctgcaagtttttttacctacaacctttttgaattcatttcaggttga |
8024360 |
T |
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| Q |
226 |
cttgaagtctacggtataagtttatttttcttctctc |
262 |
Q |
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| T |
8024361 |
cttgaagtctatgctacaagtttatttttcttctctc |
8024397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 18647484 - 18647620
Alignment:
| Q |
126 |
tactcatatgtttcaaatcaaatgtatttctttcaattgtaattttgtcacccctgcaagttattttacctacaaccatttcaaattcattttaggttga |
225 |
Q |
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|||||||| |||| |||| |||| ||||||||||| |||| |||||| | |||||||||| |||||||||||||| ||| ||||||||| ||||||| |
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| T |
18647484 |
tactcatacgttttgaatctaatgattttctttcaatggtaactttgtcccacctgcaagtttttttacctacaacctttttgaattcatttcaggttga |
18647583 |
T |
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| Q |
226 |
cttgaagtctacggtataagtttatttttcttctctc |
262 |
Q |
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| T |
18647584 |
cttgaagtctatgctacaagtttatttttcttctctc |
18647620 |
T |
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