View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_33 (Length: 249)
Name: NF3070_low_33
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 35212381 - 35212622
Alignment:
| Q |
1 |
aactgtaagatatagtctgagatttgttagaattagttaagtttgttataggtagtttcaacttaaaaggttggttagtaacttagtattaattatttgt |
100 |
Q |
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| T |
35212381 |
aactgtaagatatagtctgagatttgttagaattagttaagtttgttataggtagtttcaacttaaa-ggttggttagtaacttagtattaattatttgt |
35212479 |
T |
|
| Q |
101 |
taacttagttatgatcaccatattaagtgtatagtatacactacactccttgttatcaactttctgccattctatcaattccaagtaatcaatatttctc |
200 |
Q |
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| T |
35212480 |
taacttagttatgatcaccatattaagtgtatagtatacactacactccttgttatcaactttctgtcattctatcaattccaagtaatcaatatttctc |
35212579 |
T |
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| Q |
201 |
tcaaattattttcctcttaggttggactctaccattcatctca |
243 |
Q |
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| T |
35212580 |
tcaaattattttcctcttaggttggactctaccattcttctca |
35212622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 11708361 - 11708318
Alignment:
| Q |
168 |
cattctatcaattccaagtaatcaatatttctctcaaattattt |
211 |
Q |
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| T |
11708361 |
cattctatcaattccaaataatcaatctttctctcaatttattt |
11708318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 45518887 - 45518837
Alignment:
| Q |
168 |
cattctatcaattccaagtaatcaatatttctctcaaattattttcctctt |
218 |
Q |
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| T |
45518887 |
cattctatcaatttcaaataatcaatctttctctcaatttatttttctctt |
45518837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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