View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_4 (Length: 553)
Name: NF3070_low_4
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 16 - 553
Target Start/End: Complemental strand, 37721617 - 37721080
Alignment:
| Q |
16 |
aatatttagagcttcaattagaaagtattgcttaaaagacctgcattaaatgatgagcaaaatgagtaaaaactgataataaaaccaaaccttcttatca |
115 |
Q |
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| T |
37721617 |
aatatttagagcttcaattagaaagtattgcttaaaagacctgcattaaatgatgagcaaaatgagtaaaaactgataataaaaccaaaccttcttatca |
37721518 |
T |
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| Q |
116 |
agtggaccatatcatcatatacagaaacattacatcataatccaaaatcatcaattcaaaatacactaggagccacatcatgctatcaaactttgattta |
215 |
Q |
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| T |
37721517 |
agtggaccatatcatcatatacagaaacattacatcataatccaaaatcatcaattcaaaatacactaggagccacgtcacgctatcaaactttgattta |
37721418 |
T |
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| Q |
216 |
taaaaatgattattttgataagttgcacaagtaactaacagcagtcgggggttcaaaagaaagtctgcgactacaatttggaccgcgatatcatcacatc |
315 |
Q |
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| T |
37721417 |
taaaaatgattattttgataagttgcacaagtaactaacagcagtcgggggttcaaaagaaagtctgcgactacaatttggaccgcgatatcatcacatc |
37721318 |
T |
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| Q |
316 |
aaaattttaaacgtctctgtgacaattgtgatccaattgcgatatcaccacaacatgatcacaattgatgattgaacccacatcagcgtcagttgaccgc |
415 |
Q |
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| T |
37721317 |
aaaattttaaacgtctctgcgacaattgtgatccaattgcgatatcaccacaacatgatcacaattgttgattgaacccacatcagcgtcagttgaccgc |
37721218 |
T |
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| Q |
416 |
gattctcaccaatattaagcatcatagtgcaacacaatcaaaccacaacttaaaatcttaacaacaatacactaaaacactcaactaaatttcaagactt |
515 |
Q |
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| T |
37721217 |
gattctcaccaatattaagcatcatagtgcaacacaatcaaaccacaacttaaaatcttaacaacaatacactaaaacactcaactaaatttcaagactt |
37721118 |
T |
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| Q |
516 |
tacaaggaacacaaatcagagaagatgatcaaatgaaa |
553 |
Q |
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| T |
37721117 |
tacaaggaacacaaatcagagaagatgatcaaatgaaa |
37721080 |
T |
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