View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_40 (Length: 236)
Name: NF3070_low_40
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 474926 - 474708
Alignment:
| Q |
18 |
aactttactataataacaaggattttaaataaagtttttgctttgtgcatagtggcatgtaaatgaaatttgggtccatacacataaaccttcaattaag |
117 |
Q |
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| T |
474926 |
aactttactataataacaaggattttaaataaagtttttgctttgtgcatagtggcatgtaaatgaaatttgggtccatacacataaaccttcaattaag |
474827 |
T |
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| Q |
118 |
tgaatatatttggttgttggtagttgtagataaagtatttcaaaagtgagtcacaagttgcttggtgatagcttttagagagtttgtaccatgtgatttg |
217 |
Q |
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| T |
474826 |
tgaatatatttggttgttgggagttgtagataaagtatttcaaaagtgagtcacaagttgcttggtgatagcttttagagagtttgtaccatgtgatttg |
474727 |
T |
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| Q |
218 |
gacttgtaagaaaatttat |
236 |
Q |
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| T |
474726 |
gacttgtaagaaaatttat |
474708 |
T |
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