View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_5 (Length: 529)
Name: NF3070_low_5
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Original strand, 46429286 - 46429801
Alignment:
| Q |
19 |
atcgaatctttcaagtagaacaatgtaagttgatggaaaagaaaactacttactgtgagctaggcaattttaatgnnnnnnncttcttcttctgaaacgg |
118 |
Q |
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| T |
46429286 |
atcgaatctttcaagtagaacaatgtaagttgatggaaaagaaaactacttactgtgagctaggcaattttaatgtttttttcttcttcttctgaaacag |
46429385 |
T |
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| Q |
119 |
ccaaacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagatgttatacctcccaatctct-aagtccctcatgcaataccgcca |
217 |
Q |
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| T |
46429386 |
ccaa-catagccgtctataattattagaatgttagcaggcagcgatcaaaccaagacgttatacctcccaatctcttaagtccctcatgcaataccgcca |
46429484 |
T |
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| Q |
218 |
gaatcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgta |
317 |
Q |
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| T |
46429485 |
gaatcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgta |
46429584 |
T |
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| Q |
318 |
ggacatgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagcgaacttaaaactt-------------caacaagtaga |
404 |
Q |
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| T |
46429585 |
ggacatgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaacagataaatgcaacaggtaga |
46429684 |
T |
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| Q |
405 |
tgattgtgtaataatctact-nnnnnnnctgctttcatgtagagggaccatgactatctcattgatatacaaacatcaaattgcagctaatatcagttga |
503 |
Q |
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| T |
46429685 |
tgattgtgtaataatctactaaaaaaaactgctttcatgtagagggaccatgactatctcattgatatacaaacatcaaattgcagctaatatcagttga |
46429784 |
T |
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| Q |
504 |
aaaaattgagtgatgat |
520 |
Q |
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| T |
46429785 |
aaaaactgagtgctgat |
46429801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 46425927 - 46425971
Alignment:
| Q |
31 |
aagtagaacaatgtaagttgatggaaaagaaaactacttactgtg |
75 |
Q |
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| T |
46425927 |
aagtagaacaatgaaagttgatggaaaagaagactactcactgtg |
46425971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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