View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3070_low_8 (Length: 405)
Name: NF3070_low_8
Description: NF3070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3070_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 249 - 388
Target Start/End: Complemental strand, 51151236 - 51151097
Alignment:
| Q |
249 |
tgtactacctgccagctccaaagtgctaaatgagcccaataatgtggaatagcaacatctccaatatgcaatgaagggtttgcatttccagcaattccgt |
348 |
Q |
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| T |
51151236 |
tgtactacctgccagctccaaagtgctaaatgagcccaataatgtggaatagcaacatctccaatatgcaatgaagggtttgcatttccagcaattccgt |
51151137 |
T |
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| Q |
349 |
aatgaacaactccatctactttgaaaaagcttaatagaag |
388 |
Q |
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| T |
51151136 |
aatgaacaactccatctactttgaaaaagcttaatagaag |
51151097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 249 - 388
Target Start/End: Complemental strand, 51163537 - 51163398
Alignment:
| Q |
249 |
tgtactacctgccagctccaaagtgctaaatgagcccaataatgtggaatagcaacatctccaatatgcaatgaagggtttgcatttccagcaattccgt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51163537 |
tgtactacctgccagctccaaagtgctaaatgagcccaataatgtggaatagcaacatctccaatatgcaatgaagggtttgcatttccagcaattccgt |
51163438 |
T |
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| Q |
349 |
aatgaacaactccatctactttgaaaaagcttaatagaag |
388 |
Q |
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| T |
51163437 |
aatgaacaactccatctactttgaaaaagcttaatagaag |
51163398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 51164269 - 51164183
Alignment:
| Q |
15 |
aacaaagccaaaagatgagttgagannnnnnngaaagaaaaagatgacttgaaataaagataaagaaataagtaccattcacattca |
101 |
Q |
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| T |
51164269 |
aacaaagccaaaagatgacttgagatttttttgaaagaaaaagatgacttgagataaagataaagaaataagtaccattcacattca |
51164183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 51164060 - 51164007
Alignment:
| Q |
224 |
ggtaatatttaattaactgtttcagtgtactacctgccagctccaaagtgctaa |
277 |
Q |
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| T |
51164060 |
ggtaatatttaattaactgtttcagtgtactacctgccagctccaaagtgctaa |
51164007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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