View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3071_high_1 (Length: 685)

Name: NF3071_high_1
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3071_high_1
NF3071_high_1
[»] chr7 (7 HSPs)
chr7 (373-685)||(25126382-25126714)
chr7 (124-350)||(25127852-25128078)
chr7 (373-520)||(7015599-7015746)
chr7 (373-520)||(7030957-7031104)
chr7 (373-520)||(7064585-7064732)
chr7 (380-487)||(7060143-7060250)
chr7 (305-345)||(38123796-38123836)
[»] scaffold1302 (1 HSPs)
scaffold1302 (373-487)||(854-968)
[»] chr5 (2 HSPs)
chr5 (301-345)||(15368136-15368180)
chr5 (301-345)||(37121478-37121522)
[»] chr3 (3 HSPs)
chr3 (301-345)||(52925759-52925803)
chr3 (301-345)||(25129670-25129714)
chr3 (304-340)||(35253557-35253593)
[»] chr8 (2 HSPs)
chr8 (301-345)||(4950378-4950422)
chr8 (301-345)||(41614737-41614781)
[»] chr6 (2 HSPs)
chr6 (305-341)||(19601714-19601750)
chr6 (301-345)||(29240600-29240644)
[»] chr2 (1 HSPs)
chr2 (301-345)||(7629755-7629799)
[»] chr1 (1 HSPs)
chr1 (301-345)||(20721063-20721107)


Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 373 - 685
Target Start/End: Complemental strand, 25126714 - 25126382
Alignment:
Q  373 gtccccgaatgcttttcatcacagctacaaatgtcctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 472  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25126714 gtccccgaatgcttttcatcacagctacaaatgttctcttttataaattaaggaggcaacgaaagtgagcttcaattcacgaaatatattatccaaaatg 25126615  T
Q  473 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatctaccagaagagcagcgccaaatgatcaaagaattattcttgtgtcaaagggg 572  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25126614 caacagtcttgagcagtgtcaagatttacagaaatacctcttcaaatctaccagaagagcagcgccaaatgatcaaagaattattcttgtttcaaagggg 25126515  T
Q  573 ttctgttctacgccaacctcattttgaatggat--------------------aagtggcatttgtttcattcagagtggctgcttttattcgttttatc 652  Q
    |||||||||||||||||||||||||||||||||                    ||| |||||| |||||||||||||||||||||||||||| |||||||    
T  25126514 ttctgttctacgccaacctcattttgaatggatatagaactagaaatctgaagaagaggcattcgtttcattcagagtggctgcttttattcattttatc 25126415  T
Q  653 tgaatcttaactacagttatttatgactgatga 685  Q
    |||||||||||||||||||||||||||||||||    
T  25126414 tgaatcttaactacagttatttatgactgatga 25126382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 124 - 350
Target Start/End: Complemental strand, 25128078 - 25127852
Alignment:
Q  124 cgagtgcaaagcatccctcgaaagagtgtgactccactttgaaaccctaatcgtgaacctcatcacaaaggtaacaactcactcccattatttctttttt 223  Q
    ||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25128078 cgagtacaaagcatcccttggaagagtgtgactccactgtgaaaccctaatcgtgaacctcatcacaaaggtaacaactcactcccattatttttttttt 25127979  T
Q  224 aatgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactcatcaatgaatagtgattctgtatgtttggttccatttttgg 323  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25127978 actgaaattctcactctgatcattgttgtctctcgttagagtttctttttaattcactcatcaatgaatagtgattctgtatgtgtggttccatttttgg 25127879  T
Q  324 aggcgtcaaaattgattctagaaattg 350  Q
    |||||||||||||||||||||||||||    
T  25127878 aggcgtcaaaattgattctagaaattg 25127852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 373 - 520
Target Start/End: Complemental strand, 7015746 - 7015599
Alignment:
Q  373 gtccccgaatgcttttcatcacagctacaaatgtcctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 472  Q
    |||||| ||||| |||||||||| |||||||||| ||||||||| |||||||||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7015746 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7015647  T
Q  473 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 520  Q
    ||||  |||||||||   |||  || ||||||||||||||||||||||    
T  7015646 caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc 7015599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 373 - 520
Target Start/End: Complemental strand, 7031104 - 7030957
Alignment:
Q  373 gtccccgaatgcttttcatcacagctacaaatgtcctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 472  Q
    |||||| ||||| |||||||||| |||||||||| ||||||||| |||||||||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7031104 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattatggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7031005  T
Q  473 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 520  Q
    ||||  |||||||||   |||  || ||||||||||||||||||||||    
T  7031004 caactctcttgcgcaacgtcaccatctacagaaatacctcttcaaatc 7030957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 373 - 520
Target Start/End: Complemental strand, 7064732 - 7064585
Alignment:
Q  373 gtccccgaatgcttttcatcacagctacaaatgtcctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 472  Q
    |||||| ||||| |||||||||| |||||||||| ||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  7064732 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 7064633  T
Q  473 caacagtcttgcgcagtatcaagatttacagaaatacctcttcaaatc 520  Q
    ||||  |||||||||   |||  || |||| |||||||||||||||||    
T  7064632 caactctcttgcgcaacgtcaccatctacacaaatacctcttcaaatc 7064585  T

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Target: chr7; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 380 - 487
Target Start/End: Complemental strand, 7060250 - 7060143
Alignment:
Q  380 aatgcttttcatcacagctacaaatgtcctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatgcaacagt 479  Q
    ||||| |||||| ||| |||||||||| ||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||||||  |    
T  7060250 aatgcatttcattacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatgcaactct 7060151  T
Q  480 cttgcgca 487  Q
    ||||||||    
T  7060150 cttgcgca 7060143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 38123836 - 38123796
Alignment:
Q  305 tgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctaga 38123796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1302 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold1302
Description:

Target: scaffold1302; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 373 - 487
Target Start/End: Complemental strand, 968 - 854
Alignment:
Q  373 gtccccgaatgcttttcatcacagctacaaatgtcctcttttataaattatggaggcaacgaaagtgagcttcaattcaccaaatatattatccaaaatg 472  Q
    |||||| ||||| |||||||||| |||||||||| ||||||||| ||||| |||||||||  ||| ||||||||||||||||||||| || |||||||||    
T  968 gtcccccaatgcatttcatcacatctacaaatgttctcttttattaattacggaggcaacctaagcgagcttcaattcaccaaatatgttgtccaaaatg 869  T
Q  473 caacagtcttgcgca 487  Q
    ||||  |||||||||    
T  868 caactctcttgcgca 854  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 15368136 - 15368180
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattctaga 15368180  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 37121478 - 37121522
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    ||||||||||||||||||| | |||| | ||||||||||||||||    
T  37121478 tgtatgtttggttccatttgtagaggagccaaaattgattctaga 37121522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 52925803 - 52925759
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||    
T  52925803 tgtatgttcggttccacttttggaggagtcaaaattgattctaga 52925759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 25129714 - 25129670
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    ||||||||||||| || |||| |||| ||||||||||||||||||    
T  25129714 tgtatgtttggtttcaattttcgaggggtcaaaattgattctaga 25129670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 35253593 - 35253557
Alignment:
Q  304 atgtttggttccatttttggaggcgtcaaaattgatt 340  Q
    ||||||||||||||||||||||| | |||||||||||    
T  35253593 atgtttggttccatttttggaggtgccaaaattgatt 35253557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 4950378 - 4950422
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    |||||||||||||||| ||||||||| |  |||||||||||||||    
T  4950378 tgtatgtttggttccaattttggaggtgctaaaattgattctaga 4950422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 41614737 - 41614781
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    ||||||||||||||||||| || ||| | ||||||||||||||||    
T  41614737 tgtatgtttggttccatttgtgtaggagccaaaattgattctaga 41614781  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 19601714 - 19601750
Alignment:
Q  305 tgtttggttccatttttggaggcgtcaaaattgattc 341  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  19601714 tgtttggttccacttttggaggagtcaaaattgattc 19601750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 29240644 - 29240600
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    |||||||||||||||| |||||| ||  |||||||||||||||||    
T  29240644 tgtatgtttggttccacttttgggggaatcaaaattgattctaga 29240600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 7629755 - 7629799
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||    
T  7629755 tgtatgtttggttccacttttggaggagccaagattgattctaga 7629799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 20721107 - 20721063
Alignment:
Q  301 tgtatgtttggttccatttttggaggcgtcaaaattgattctaga 345  Q
    ||||||||| |||||| |||||||||  |||||||||||||||||    
T  20721107 tgtatgttttgttccacttttggaggaatcaaaattgattctaga 20721063  T

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