View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3071_high_13 (Length: 340)
Name: NF3071_high_13
Description: NF3071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3071_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 55 - 323
Target Start/End: Original strand, 9656420 - 9656686
Alignment:
| Q |
55 |
ctttttaagaacttatttgttatcagtcatccgattaaactatggttcaacctgtctccggtccggttttaaaaacattgatccgtatttcactgaaact |
154 |
Q |
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| T |
9656420 |
ctttttaagaacttatttgttatcagtcatccgattcaactatggttcaacctgtctccggtccggttttaaaaacattgatccgtatttcactgaaact |
9656519 |
T |
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| Q |
155 |
ttatgtaatatcaaggattgtgatgcaaccacaaaatggctatggcaatttgaaatggttgcaaattttcgcattggttgtatttgaatacacaatttga |
254 |
Q |
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| T |
9656520 |
ttatgtaatatcaaggattgtgatgcaaccacaaaatggctatggcaatttgaaatggttgcaaattttcgcattggttgtatttgaat--acaatttga |
9656617 |
T |
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| Q |
255 |
cctataagggtatatacatgaaacataatatattatcatgatctatacctcttcggcagtgctggcaac |
323 |
Q |
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| T |
9656618 |
cctataagggtatatacatgaaacataatatattatcatgatctatacctcttcggcagtgctggcaac |
9656686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 9640360 - 9640399
Alignment:
| Q |
286 |
attatcatgatctatacctcttcggcagtgctggcaactg |
325 |
Q |
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| T |
9640360 |
attatcatgatctatacctcttcagcagcgctggcaactg |
9640399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 322
Target Start/End: Original strand, 9615955 - 9615984
Alignment:
| Q |
293 |
tgatctatacctcttcggcagtgctggcaa |
322 |
Q |
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| T |
9615955 |
tgatctatacctcttcggcagtgctggcaa |
9615984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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